C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12738
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122349 Gm12738-001 ENSMUSG00000083255 10090 - 4:108450807-108451342 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000122349
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000122349 0.057±0.00 0.086±0.01 0.014±0.00 0.224±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VF CIL_0001VF_0002 CGP 4:108400390-108559421

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 420
ENST00000392269 RP11-256K7.1-001 processed_pseudogene Homo_sapiens 0 254
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 425
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 252
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 2.00386e-43 180
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 420
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 364
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 340
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 425
ENST00000489027 RP11-64K12.1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000489563 RPL9P25-001 processed_pseudogene Homo_sapiens 0 368
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 363
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 353
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 363
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 353
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 246
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 272
ENST00000561773 TIPIN-006 processed_transcript Homo_sapiens 0 368

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