C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9 pseudogene 32
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464118 RPL9P32-001 ENSG00000242100 9606 - 19:29956369-29956988 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000464118
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000464118 0.383±0.00 0.043±0.00 0.272±0.00 0.868±0.00 0.019±0.00 0.106±0.00 0.040±0.02 0.111±0.00 0.411±0.36 0.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TZ CIL_0008TZ_0001 VISTA 19:29588658-30189738
CIL_000835 CIL_000835_0001 VISTA 19:29703707-30304596
CIL_000834 CIL_000834_0001 VISTA 19:29775043-30376109
CIL_00090S CIL_00090S_0001 VISTA 19:29783480-30384453
CIL_0007OB CIL_0007OB_0001 UCNEbase 19:29888853-30910612
CIL_0007PW CIL_0007PW_0001 VISTA 19:29956150-30557741

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 673
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 667
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 667
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 662
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 651
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 619
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 619
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 549
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000174221 Rpl9-ps5-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 457
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000129885 Gm14562-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000122349 Gm12738-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000183960 Gm27161-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000121372 Gm14732-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000150815 Rpl9-005 retained_intron Mus_musculus 0 291
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 0 291
ENSMUST00000127874 Rpl9-003 protein_coding Mus_musculus 0 267
ENSMUST00000117292 Gm15516-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 224
ENSMUST00000119911 Gm15828-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000120358 Gm15037-001 processed_pseudogene Mus_musculus 3.00004e-41 172
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 9.99995e-41 171
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 8e-27 124

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