C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9 pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489563 RPL9P25-001 ENSG00000240821 9606 - 15:66379337-66379915 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartLungENST00000489563
Transcript ID Adipose Bladder Breast Colon Heart Lung
ENST00000489563 0.747±0.00 0.880±0.00 0.676±0.17 0.907±0.00 1.155±0.00 4.087±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q7 CIL_0008Q7_0001 VISTA 15:66378983-66980203

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 678
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 678
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 673
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 673
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 662
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 625
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 625
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 566
ENSMUST00000119091 Gm8087-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 462
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000122349 Gm12738-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 9.80909e-45 183
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 9.80909e-45 183
ENSMUST00000129885 Gm14562-001 processed_pseudogene Mus_musculus 2e-37 159

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