C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489027 RP11-64K12.1-001 ENSG00000244251 9606 - 15:40480752-40481315 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000489027
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000489027 0.452±0.00 0.447±0.00 0.190±0.00 0.207±0.00 0.518±0.00 0.019±0.00 0.062±0.00 0.073±0.00 0.268±0.00 0.165±0.00 0.232±0.00 0.257±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070H CIL_00070H_0001 CGP 15:40470998-40565057

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 575
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 575
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 569
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 569
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 564
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 532
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 532
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 525
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000174221 Rpl9-ps5-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 422
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000122349 Gm12738-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 5.99756e-43 178
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 5.99756e-43 178
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 1e-39 167
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 2e-27 126

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