C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13981
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122360 Gm13981-001 ENSMUSG00000074930 10090 + 2:117055566-117056012 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverMuscleTestisENSMUST00000122360
Transcript ID Brain Breast Liver Muscle Testis
ENSMUST00000122360 0.008±0.00 0.370±0.00 0.036±0.00 0.125±0.00 0.098±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000806 CIL_000806_0002 VISTA 2:116507729-117109252
CIL_0006QQ CIL_0006QQ_0002 CGP 2:116878691-117182279

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 545
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 396
ENST00000424277 RPL27AP8-001 processed_pseudogene Homo_sapiens 0 363
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 374
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 440
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 523
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 462
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 390
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 542
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 390
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 370
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 462

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