C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000003698 SMARCA4 (1 of 2)-201 ENSDARG00000008350 7955 + Zv9_NA996:105-10087 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000003698
Transcript ID Brain Heart Kidney Muscle
ENSDART00000003698 6.612±6.50 0.674±0.00 0.091±0.00 1.848±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058P CIL_00058P_0001 CGP Zv9_NA996:105-19242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 998
ENSMUST00000034707 Smarca4-001 protein_coding Mus_musculus 0 1428
ENSMUST00000098948 Smarca4-201 protein_coding Mus_musculus 0 1458
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 998
ENSMUST00000174008 Smarca4-003 protein_coding Mus_musculus 0 1428
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 0 909
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 998
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 697
ENST00000344626 SMARCA4-001 protein_coding Homo_sapiens 0 1297
ENST00000349721 SMARCA2-202 protein_coding Homo_sapiens 0 952
ENST00000357248 SMARCA2-203 protein_coding Homo_sapiens 0 952
ENST00000382194 SMARCA2-004 protein_coding Homo_sapiens 0 952
ENST00000382203 SMARCA2-003 protein_coding Homo_sapiens 0 952
ENST00000413806 SMARCA4-201 protein_coding Homo_sapiens 0 1646
ENST00000429416 SMARCA4-007 protein_coding Homo_sapiens 0 1297
ENST00000444061 SMARCA4-003 protein_coding Homo_sapiens 0 1616
ENST00000450717 SMARCA4-202 protein_coding Homo_sapiens 0 1297
ENST00000538456 SMARCA4-006 processed_transcript Homo_sapiens 0 357
ENST00000541122 SMARCA4-005 protein_coding Homo_sapiens 0 1646
ENST00000585799 SMARCA4-011 retained_intron Homo_sapiens 0 1502
ENST00000586122 SMARCA4-016 processed_transcript Homo_sapiens 0 544
ENST00000586892 SMARCA4-013 retained_intron Homo_sapiens 0 285
ENST00000587988 SMARCA4-012 retained_intron Homo_sapiens 0 525
ENST00000589677 SMARCA4-004 protein_coding Homo_sapiens 0 1646
ENST00000590574 SMARCA4-002 protein_coding Homo_sapiens 0 1616
ENST00000591545 SMARCA4-009 retained_intron Homo_sapiens 0 1022
ENST00000591595 SMARCA4-010 retained_intron Homo_sapiens 0 1559
ENST00000592158 SMARCA4-018 protein_coding Homo_sapiens 0 198
ENST00000592604 SMARCA4-008 retained_intron Homo_sapiens 0 1646

Loading