C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19, pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181233 Rps19-ps6-001 ENSMUSG00000096942 10090 + 12:110898114-110898551 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000181233
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000181233 9.190±1.43 10.307±1.89 8.025±5.21 3.283±1.18 1.255±0.57 1.169±0.68 0.901±0.53 3.672±2.19 2.320±0.54 0.558±0.26 6.385±6.22 15.857±21.07 2.683±3.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AG CIL_0009AG_0002 VISTA 12:110842738-111443613
CIL_00040U CIL_00040U_0002 CGP 12:110872610-110972394
CIL_0000F2 CIL_0000F2_0002 CGP 12:110889264-110979040

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 0 649
ENST00000405355 RP11-346C16.4-001 processed_pseudogene Homo_sapiens 0 481
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 0 580
ENST00000455650 RP11-445N18.3-001 processed_pseudogene Homo_sapiens 0 438
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 0 412
ENST00000477321 RP11-289K10.1-001 processed_pseudogene Homo_sapiens 0 497
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 0 568
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 0 665
ENST00000598261 RPS19-007 protein_coding Homo_sapiens 0 370
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000598466 RPS19-004 retained_intron Homo_sapiens 0 268
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 0 665
ENST00000600467 RPS19-002 protein_coding Homo_sapiens 0 351
ENST00000601492 RPS19-003 protein_coding Homo_sapiens 0 268

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