C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7833
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183288 Gm7833-001 ENSMUSG00000097943 10090 + 6:94820530-94821519 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyOvaryPlacentaTestisENSMUST00000183288
Transcript ID Brain Colon Kidney Ovary Placenta Testis
ENSMUST00000183288 0.008±0.00 0.184±0.06 0.035±0.00 0.091±0.00 0.021±0.01 0.030±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B3 CIL_0009B3_0002 VISTA 6:94453098-95057440
CIL_0003RC CIL_0003RC_0003 CGP 6:94604529-95129718

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 257
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 939
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 747
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 928
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 939
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 939
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 760
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 782
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 246
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 688
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 658
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 815
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 745
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 518
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 483
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 885
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 625
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 446
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 747
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 747
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 667
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 675
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 747
ENST00000511530 GAPDHP71-001 processed_pseudogene Homo_sapiens 0 732
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 641
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 719
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 451
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 859

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