C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 19353
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184561 Gm19353-001 ENSMUSG00000098492 10090 + 9:72289667-72290111 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000184561
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000184561 0.460±0.23 0.176±0.00 0.397±0.00 1.127±0.53 0.306±0.12 0.224±0.09 0.280±0.13 0.407±0.12 0.496±0.30 0.368±0.17 0.167±0.02 0.477±0.18 0.437±0.16 0.360±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OY CIL_0004OY_0002 CGP 9:71842688-72363777

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 534
ENST00000415679 RP11-226L15.1-001 processed_pseudogene Homo_sapiens 0 361
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 412
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 512
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 2e-17 94
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 1e-38 163
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 1e-19 100
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 531
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 4e-39 165
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 370
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 8.99999e-40 167
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 2e-17 94

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