C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ubiquitin-like modifier 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326669 SUMO4-001 ENSG00000177688 9606 + 6:149400227-149401292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326669
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326669 0.051±0.00 0.040±0.00 0.668±0.00 0.226±0.12 0.528±0.28 1.284±1.11 0.024±0.01 0.380±0.28 0.701±0.62 0.845±0.38 0.017±0.00 0.829±0.96 0.175±0.03 0.254±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0016925 IEA protein sumoylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 987
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 950
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 872
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 872
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 0 590
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 366
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 324
ENSMUST00000097581 Gm10540-201 processed_pseudogene Mus_musculus 0 318
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 0 296
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 265
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 0 224

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