C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394002 HNRNPA1P6-001 ENSG00000229887 9606 - 1:58048175-58049291 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyLiverLungMuscleENST00000394002
Transcript ID Adipose Adrenal Brain Heart Kidney Liver Lung Muscle
ENST00000394002 0.055±0.00 0.072±0.00 0.030±0.00 0.027±0.00 0.029±0.00 0.079±0.00 0.028±0.00 0.038±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005G CIL_00005G_0002 CGP 1:56929210-58546734
CIL_00005F CIL_00005F_0002 CGP 1:56994778-58546802

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1118
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1116
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1066
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1029
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1024
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1020
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 887
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 874
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 874
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 845
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 725
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 2e-30 137

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