C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399556 NPM1P46-001 ENSG00000213104 9606 - 2:197379701-197380892 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000399556
Transcript ID Adipose Adrenal Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000399556 0.013±0.00 0.041±0.00 0.025±0.00 0.024±0.00 0.067±0.00 0.026±0.00 0.096±0.00 0.061±0.00 0.049±0.00 0.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042O CIL_00042O_0002 CGP 2:196967017-197435091
CIL_0007X7 CIL_0007X7_0001 VISTA 2:196975905-197591368

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 957
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 798
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 797
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 774
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 555
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 2e-39 167
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 272
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 595

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