C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 2B class IIb pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404155 TUBB2BP1-001 ENSG00000216819 9606 - 6:3177044-3179764 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENST00000404155
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENST00000404155 0.052±0.00 0.028±0.00 0.467±0.00 0.031±0.00 0.052±0.02 0.052±0.00 0.049±0.00 0.142±0.11 0.145±0.00 0.132±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081I CIL_00081I_0001 VISTA 6:2946622-3549686
CIL_000823 CIL_000823_0001 VISTA 6:3049163-3652023
CIL_0003IU CIL_0003IU_0001 CGP 6:3153669-3231730

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1033
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1022
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 728
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 719
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 676
ENSMUST00000187481 RP23-8J15.8-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 577
ENSMUST00000160140 Gm16165-001 processed_pseudogene Mus_musculus 0 241

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