C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 2B class IIB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075774 Tubb2b-201 ENSMUSG00000045136 10090 - 13:34127008-34130354 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075774 9.440±5.43 1.078±0.50 8.612±3.22 17.442±0.00 6.876±1.21 6.703±0.70 2.244±0.11 10.358±0.45 3.234±5.25 6.400±1.08 0.604±0.24 11.817±5.13 5.959±4.93 0.394±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081I CIL_00081I_0002 VISTA 13:33848088-34450616
CIL_000823 CIL_000823_0002 VISTA 13:33947185-34549843
CIL_0003IU CIL_0003IU_0002 CGP 13:34074301-34130354
CIL_0003IV CIL_0003IV_0002 CGP 13:34127008-34178172

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1308
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1303
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1290
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1279
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1271
ENSDART00000024135 protein_coding Danio_rerio 0 1194
ENSDART00000129104 protein_coding Danio_rerio 0 1122
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 1024
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 1218
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 2130
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 1546
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 1048
ENST00000308911 RP11-683L23.1-201 protein_coding Homo_sapiens 0 1059
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1391
ENST00000317702 TUBB6-001 protein_coding Homo_sapiens 0 1387
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1267
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 1842
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1413
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1273
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1264
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1273
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1267
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1264
ENST00000404155 TUBB2BP1-001 unprocessed_pseudogene Homo_sapiens 0 1022
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 989
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1264
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1267
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 959
ENST00000417736 TUBB6-002 retained_intron Homo_sapiens 0 1321
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1264
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1264
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1273
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000422534 TUBB8P9-001 unprocessed_pseudogene Homo_sapiens 0 599
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000422712 TUBB1P2-001 unprocessed_pseudogene Homo_sapiens 0 667
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1264
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1273
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1264
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1264
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1267
ENST00000428444 TUBB7P-001 unprocessed_pseudogene Homo_sapiens 0 979
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1267
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1267
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1334
ENST00000436895 TUBB8P6-001 unprocessed_pseudogene Homo_sapiens 0 787
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1267
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1273
ENST00000445286 TUBB8P5-001 unprocessed_pseudogene Homo_sapiens 0 891
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1273
ENST00000447903 TUBB8-201 protein_coding Homo_sapiens 0 979
ENST00000450755 TUBB4AP1-001 processed_pseudogene Homo_sapiens 0 1186
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1273
ENST00000454403 TUBBP2-001 processed_pseudogene Homo_sapiens 0 464
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1267
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1273
ENST00000458717 TUBB8P8-001 unprocessed_pseudogene Homo_sapiens 0 931
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1997
ENST00000489942 TUBB2A-002 processed_transcript Homo_sapiens 0 457
ENST00000503144 TUBB1P1-001 unprocessed_pseudogene Homo_sapiens 0 726
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1048
ENST00000510182 TUBB8P3-001 processed_pseudogene Homo_sapiens 0 604
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 1223
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 1546
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1317
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1280
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1317
ENST00000560273 TUBBP8-001 processed_pseudogene Homo_sapiens 0 468
ENST00000561967 TUBB8-007 protein_coding Homo_sapiens 0 1013
ENST00000562809 TUBB8-002 protein_coding Homo_sapiens 0 656
ENST00000563927 TUBB8P7-001 processed_transcript Homo_sapiens 0 922
ENST00000564130 TUBB8-005 protein_coding Homo_sapiens 0 972
ENST00000564451 TUBB8P7-004 processed_transcript Homo_sapiens 0 922
ENST00000567207 TUBB8P7-002 processed_transcript Homo_sapiens 0 1011
ENST00000567960 TUBB8P7-003 polymorphic_pseudogene Homo_sapiens 0 1011
ENST00000568584 TUBB8-001 protein_coding Homo_sapiens 0 1103
ENST00000568866 TUBB8-008 protein_coding Homo_sapiens 0 974
ENST00000573909 RP11-683L23.1-002 protein_coding Homo_sapiens 0 950
ENST00000586810 TUBB6-003 nonsense_mediated_decay Homo_sapiens 0 802
ENST00000590103 TUBB6-008 protein_coding Homo_sapiens 0 957
ENST00000591208 TUBB6-005 protein_coding Homo_sapiens 0 1098
ENST00000591463 TUBB6-014 protein_coding Homo_sapiens 0 392
ENST00000594075 TUBB4A-009 protein_coding Homo_sapiens 0 359
ENST00000594276 TUBB4A-010 protein_coding Homo_sapiens 0 375
ENST00000595324 TUBB4A-011 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000600216 TUBB4A-015 protein_coding Homo_sapiens 0 409
ENST00000601152 TUBB4A-007 protein_coding Homo_sapiens 0 394
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1212

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