C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 4B class IVB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043584 Tubb4b-001 ENSMUSG00000036752 10090 - 2:25222160-25224702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043584
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043584 146.809±4.28 110.210±14.91 204.253±33.74 120.621±38.25 119.060±10.72 340.913±60.11 107.939±5.17 110.064±4.41 266.490±209.34 223.009±2.47 79.094±5.75 205.469±67.35 170.023±87.42 877.841±261.74

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0003924 IEA GTPase activity
GO:0005200 IDA:IEA structural constituent of cytoskeleton
GO:0005525 IEA:NAS GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IDA:IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IDA:NAS microtubule-based process
GO:0031982 IEA vesicle
GO:0045298 NAS tubulin complex
GO:0051225 IDA spindle assembly
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1245
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1199
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1170
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1168
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1162
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1151
ENST00000217133 TUBB1-001 protein_coding Homo_sapiens 0 571
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 1133
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 1380
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 1327
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 1262
ENST00000308911 RP11-683L23.1-201 protein_coding Homo_sapiens 0 1315
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1192
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1242
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1181
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 1384
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1862
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1242
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1181
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000404155 TUBB2BP1-001 unprocessed_pseudogene Homo_sapiens 0 728
ENST00000405234 TUBBP9-001 processed_pseudogene Homo_sapiens 0 545
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 806
ENST00000406999 TUBB4BP7-001 processed_pseudogene Homo_sapiens 0 953
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1181
ENST00000415481 TUBB8P11-001 unprocessed_pseudogene Homo_sapiens 0 1009
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 924
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1242
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1242
ENST00000422534 TUBB8P9-001 unprocessed_pseudogene Homo_sapiens 0 859
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1242
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1242
ENST00000422712 TUBB1P2-001 unprocessed_pseudogene Homo_sapiens 0 913
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1181
ENST00000428444 TUBB7P-001 unprocessed_pseudogene Homo_sapiens 0 1199
ENST00000430210 TUBB8P10-001 unprocessed_pseudogene Homo_sapiens 0 880
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1242
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1181
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1181
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1242
ENST00000436895 TUBB8P6-001 unprocessed_pseudogene Homo_sapiens 0 981
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1181
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000444710 AC008069.2-001 processed_pseudogene Homo_sapiens 0 568
ENST00000445286 TUBB8P5-001 unprocessed_pseudogene Homo_sapiens 0 1116
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000447903 TUBB8-201 protein_coding Homo_sapiens 0 1199
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000454125 TUBB4BP2-001 processed_pseudogene Homo_sapiens 0 457
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1181
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000458717 TUBB8P8-001 unprocessed_pseudogene Homo_sapiens 0 1022
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1312
ENST00000503144 TUBB1P1-001 unprocessed_pseudogene Homo_sapiens 0 981
ENST00000503395 TUBBP5-003 processed_transcript Homo_sapiens 0 364
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1269
ENST00000510182 TUBB8P3-001 processed_pseudogene Homo_sapiens 0 671
ENST00000511806 TUBB8P4-001 unprocessed_pseudogene Homo_sapiens 0 952
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 1136
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 1327
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1127
ENST00000554689 RP11-88E18.1-001 processed_pseudogene Homo_sapiens 0 575
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1072
ENST00000555810 TUBB3-004 protein_coding Homo_sapiens 0 540
ENST00000556536 TUBB3-012 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1123
ENST00000557490 TUBB3-014 nonsense_mediated_decay Homo_sapiens 0 265
ENST00000561967 TUBB8-007 protein_coding Homo_sapiens 0 1266
ENST00000562809 TUBB8-002 protein_coding Homo_sapiens 0 822
ENST00000563456 TUBB8-003 retained_intron Homo_sapiens 0 582
ENST00000563927 TUBB8P7-001 processed_transcript Homo_sapiens 0 1014
ENST00000564130 TUBB8-005 protein_coding Homo_sapiens 0 1083
ENST00000564451 TUBB8P7-004 processed_transcript Homo_sapiens 0 1020
ENST00000567207 TUBB8P7-002 processed_transcript Homo_sapiens 0 1227
ENST00000567466 TUBB8-006 nonsense_mediated_decay Homo_sapiens 0 595
ENST00000567960 TUBB8P7-003 polymorphic_pseudogene Homo_sapiens 0 1236
ENST00000568584 TUBB8-001 protein_coding Homo_sapiens 0 1365
ENST00000568866 TUBB8-008 protein_coding Homo_sapiens 0 1083
ENST00000573909 RP11-683L23.1-002 protein_coding Homo_sapiens 0 1066
ENST00000594555 RP11-683L23.1-005 processed_transcript Homo_sapiens 0 558
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1489

Loading