C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 4B class IVB, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179460 Tubb4b-ps1-201 ENSMUSG00000095159 10090 + 5:7179365-7180699 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000179460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179460 0.715±0.09 0.065±0.02 0.090±0.05 3.335±4.15 0.297±0.09 0.756±0.32 0.309±0.15 0.165±0.09 4.704±12.71 0.544±0.15 0.039±0.01 0.421±0.30 0.073±0.03 34.107±9.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005874 IDA microtubule
GO:0007017 IDA microtubule-based process
GO:0051225 IDA spindle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1230
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1149
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1146
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1140
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1116
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1092
ENST00000217133 TUBB1-001 protein_coding Homo_sapiens 0 547
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 1101
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 1323
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 1214
ENST00000308911 RP11-683L23.1-201 protein_coding Homo_sapiens 0 1269
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1160
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1218
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1162
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 1297
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1676
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1218
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1162
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1153
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1162
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1162
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1153
ENST00000404155 TUBB2BP1-001 unprocessed_pseudogene Homo_sapiens 0 676
ENST00000405234 TUBBP9-001 processed_pseudogene Homo_sapiens 0 553
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 774
ENST00000406999 TUBB4BP7-001 processed_pseudogene Homo_sapiens 0 911
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1153
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1162
ENST00000415481 TUBB8P11-001 unprocessed_pseudogene Homo_sapiens 0 985
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 905
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1153
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1218
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1153
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1162
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1218
ENST00000422534 TUBB8P9-001 unprocessed_pseudogene Homo_sapiens 0 824
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1218
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1218
ENST00000422712 TUBB1P2-001 unprocessed_pseudogene Homo_sapiens 0 861
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1153
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1162
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1153
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1153
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1162
ENST00000428444 TUBB7P-001 unprocessed_pseudogene Homo_sapiens 0 1157
ENST00000430210 TUBB8P10-001 unprocessed_pseudogene Homo_sapiens 0 843
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1218
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1162
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1162
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1218
ENST00000436895 TUBB8P6-001 unprocessed_pseudogene Homo_sapiens 0 929
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1162
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1162
ENST00000444710 AC008069.2-001 processed_pseudogene Homo_sapiens 0 555
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1162
ENST00000447903 TUBB8-201 protein_coding Homo_sapiens 0 1157
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1162
ENST00000454125 TUBB4BP2-001 processed_pseudogene Homo_sapiens 0 429
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1162
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1162
ENST00000458717 TUBB8P8-001 unprocessed_pseudogene Homo_sapiens 0 996
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1258
ENST00000503144 TUBB1P1-001 unprocessed_pseudogene Homo_sapiens 0 935
ENST00000503395 TUBBP5-003 processed_transcript Homo_sapiens 0 344
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1214
ENST00000510182 TUBB8P3-001 processed_pseudogene Homo_sapiens 0 649
ENST00000511806 TUBB8P4-001 unprocessed_pseudogene Homo_sapiens 0 898
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 1101
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1096
ENST00000554689 RP11-88E18.1-001 processed_pseudogene Homo_sapiens 0 558
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1051
ENST00000555810 TUBB3-004 protein_coding Homo_sapiens 0 514
ENST00000556536 TUBB3-012 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1092
ENST00000557490 TUBB3-014 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000561967 TUBB8-007 protein_coding Homo_sapiens 0 1218
ENST00000562809 TUBB8-002 protein_coding Homo_sapiens 0 785
ENST00000563456 TUBB8-003 retained_intron Homo_sapiens 0 551
ENST00000563927 TUBB8P7-001 processed_transcript Homo_sapiens 0 990
ENST00000564130 TUBB8-005 protein_coding Homo_sapiens 0 1053
ENST00000564451 TUBB8P7-004 processed_transcript Homo_sapiens 0 990
ENST00000567207 TUBB8P7-002 processed_transcript Homo_sapiens 0 1181
ENST00000567466 TUBB8-006 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000567960 TUBB8P7-003 polymorphic_pseudogene Homo_sapiens 0 1195
ENST00000568584 TUBB8-001 protein_coding Homo_sapiens 0 1314
ENST00000568866 TUBB8-008 protein_coding Homo_sapiens 0 1053
ENST00000573909 RP11-683L23.1-002 protein_coding Homo_sapiens 0 1037
ENST00000594555 RP11-683L23.1-005 processed_transcript Homo_sapiens 0 538
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1376

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