C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 2A class IIA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056427 Tubb2a-201 ENSMUSG00000058672 10090 - 13:34074301-34078008 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056427
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056427 69.933±9.61 16.006±2.78 57.639±7.81 113.522±0.00 42.434±3.75 35.799±3.29 25.444±0.88 36.091±2.07 109.168±46.58 75.254±14.57 3.897±0.44 54.235±20.89 26.210±13.51 4.724±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081I CIL_00081I_0002 VISTA 13:33848088-34450616
CIL_000823 CIL_000823_0002 VISTA 13:33947185-34549843
CIL_0003IT CIL_0003IT_0002 CGP 13:34037641-34078008
CIL_0003IU CIL_0003IU_0002 CGP 13:34074301-34130354

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0031982 IEA vesicle
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1282
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1277
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1240
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1240
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1232
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1218
ENSDART00000024135 protein_coding Danio_rerio 0 1195
ENSDART00000129104 protein_coding Danio_rerio 0 1136
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 1022
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 1266
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 1820
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 1493
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 1053
ENST00000308911 RP11-683L23.1-201 protein_coding Homo_sapiens 0 1075
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1386
ENST00000317702 TUBB6-001 protein_coding Homo_sapiens 0 1338
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1382
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1314
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 2045
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1450
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1382
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1315
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1312
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1315
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1314
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1312
ENST00000404155 TUBB2BP1-001 unprocessed_pseudogene Homo_sapiens 0 1033
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 968
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1312
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1314
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000417736 TUBB6-002 retained_intron Homo_sapiens 0 1267
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1312
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1382
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1312
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1315
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1382
ENST00000422534 TUBB8P9-001 unprocessed_pseudogene Homo_sapiens 0 616
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1382
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1382
ENST00000422712 TUBB1P2-001 unprocessed_pseudogene Homo_sapiens 0 654
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1312
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1315
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1312
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1312
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1314
ENST00000428444 TUBB7P-001 unprocessed_pseudogene Homo_sapiens 0 1002
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1382
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1314
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1314
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1382
ENST00000436895 TUBB8P6-001 unprocessed_pseudogene Homo_sapiens 0 832
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1314
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1315
ENST00000445286 TUBB8P5-001 unprocessed_pseudogene Homo_sapiens 0 924
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1315
ENST00000447903 TUBB8-201 protein_coding Homo_sapiens 0 1002
ENST00000450755 TUBB4AP1-001 processed_pseudogene Homo_sapiens 0 1151
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1315
ENST00000454403 TUBBP2-001 processed_pseudogene Homo_sapiens 0 470
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1314
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1315
ENST00000458717 TUBB8P8-001 unprocessed_pseudogene Homo_sapiens 0 904
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1724
ENST00000489942 TUBB2A-002 processed_transcript Homo_sapiens 0 440
ENST00000503144 TUBB1P1-001 unprocessed_pseudogene Homo_sapiens 0 732
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1053
ENST00000510182 TUBB8P3-001 processed_pseudogene Homo_sapiens 0 604
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 1271
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 1493
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1317
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1256
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1317
ENST00000561967 TUBB8-007 protein_coding Homo_sapiens 0 1051
ENST00000562809 TUBB8-002 protein_coding Homo_sapiens 0 662
ENST00000563927 TUBB8P7-001 processed_transcript Homo_sapiens 0 894
ENST00000564130 TUBB8-005 protein_coding Homo_sapiens 0 955
ENST00000564451 TUBB8P7-004 processed_transcript Homo_sapiens 0 894
ENST00000567207 TUBB8P7-002 processed_transcript Homo_sapiens 0 1027
ENST00000567960 TUBB8P7-003 polymorphic_pseudogene Homo_sapiens 0 1027
ENST00000568584 TUBB8-001 protein_coding Homo_sapiens 0 1136
ENST00000568866 TUBB8-008 protein_coding Homo_sapiens 0 957
ENST00000573909 RP11-683L23.1-002 protein_coding Homo_sapiens 0 922
ENST00000586653 TUBB6-009 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000586810 TUBB6-003 nonsense_mediated_decay Homo_sapiens 0 771
ENST00000587204 TUBB6-011 retained_intron Homo_sapiens 9.94922e-44 180
ENST00000590103 TUBB6-008 protein_coding Homo_sapiens 0 924
ENST00000590388 TUBB6-010 nonsense_mediated_decay Homo_sapiens 2.00386e-43 180
ENST00000590693 TUBB6-007 protein_coding Homo_sapiens 0 261
ENST00000590967 TUBB6-013 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000591208 TUBB6-005 protein_coding Homo_sapiens 0 1081
ENST00000591463 TUBB6-014 protein_coding Homo_sapiens 0 337
ENST00000591909 TUBB6-006 protein_coding Homo_sapiens 2.99878e-43 180
ENST00000592683 TUBB6-012 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000594075 TUBB4A-009 protein_coding Homo_sapiens 0 331
ENST00000594276 TUBB4A-010 protein_coding Homo_sapiens 0 359
ENST00000595324 TUBB4A-011 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000600216 TUBB4A-015 protein_coding Homo_sapiens 0 370
ENST00000601152 TUBB4A-007 protein_coding Homo_sapiens 0 350
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1210

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