C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16165
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160140 Gm16165-001 ENSMUSG00000089958 10090 - 9:22669734-22670528 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLungOvaryPlacentaTestisENSMUST00000160140
Transcript ID Bladder Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENSMUST00000160140 0.022±0.00 0.421±0.40 0.175±0.09 0.091±0.00 0.043±0.00 0.126±0.02 0.290±0.00 0.026±0.00 0.098±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FH CIL_0003FH_0002 CGP 9:22475715-23485202

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 582
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 560
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 532
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 520
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 508
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 503
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 641
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 510
ENST00000308911 RP11-683L23.1-201 protein_coding Homo_sapiens 0 544
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 606
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 643
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 795
ENST00000404155 TUBB2BP1-001 unprocessed_pseudogene Homo_sapiens 0 241
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000406999 TUBB4BP7-001 processed_pseudogene Homo_sapiens 0 459
ENST00000415481 TUBB8P11-001 unprocessed_pseudogene Homo_sapiens 0 505
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 451
ENST00000422712 TUBB1P2-001 unprocessed_pseudogene Homo_sapiens 0 468
ENST00000428444 TUBB7P-001 unprocessed_pseudogene Homo_sapiens 0 484
ENST00000447903 TUBB8-201 protein_coding Homo_sapiens 0 484
ENST00000454125 TUBB4BP2-001 processed_pseudogene Homo_sapiens 0 270
ENST00000458717 TUBB8P8-001 unprocessed_pseudogene Homo_sapiens 0 525
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 641
ENST00000503144 TUBB1P1-001 unprocessed_pseudogene Homo_sapiens 0 446
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 510
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 606
ENST00000554689 RP11-88E18.1-001 processed_pseudogene Homo_sapiens 0 449
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 606
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 606
ENST00000563927 TUBB8P7-001 processed_transcript Homo_sapiens 0 525
ENST00000564451 TUBB8P7-004 processed_transcript Homo_sapiens 0 525
ENST00000567207 TUBB8P7-002 processed_transcript Homo_sapiens 0 521
ENST00000567960 TUBB8P7-003 polymorphic_pseudogene Homo_sapiens 0 525
ENST00000573909 RP11-683L23.1-002 protein_coding Homo_sapiens 0 544
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 795

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