C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414620 ACTB-010 ENSG00000075624 9606 - 7:5529282-5562790 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_0002V9 CIL_0002V9_0001 CGP 7:5431335-5563784
CIL_0002V8 CIL_0002V8_0001 CGP 7:5527151-5606655

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 342
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 342
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 342
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 340
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 340
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 0 257
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 228
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 228
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 198
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 0 198
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 2.8026e-45 185
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 9.80909e-45 183
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 1.99965e-42 176
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 1.99965e-42 176
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 1.99965e-42 176
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 1.99965e-42 176

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