C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 2, smooth muscle, aorta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000155770 ACTC1 (2 of 2)-001 ENSDARG00000079111 7955 + 25:14347722-14375673 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 296
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 228
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 7.00649e-43 182
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 8.96831e-44 182
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 8e-27 126
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 4e-27 126
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 4e-27 126
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 8e-27 126
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 244
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 267
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 215
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 4.00001e-41 174
ENST00000414620 ACTB-010 protein_coding Homo_sapiens 0 198
ENST00000415557 ACTA2-002 protein_coding Homo_sapiens 0 244
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 215
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 3e-38 163
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 1.96182e-44 183
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 215
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 7.00649e-45 185
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 215
ENST00000458159 ACTA2-003 protein_coding Homo_sapiens 0 244
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 244
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 215
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 9.99995e-41 171
ENST00000480297 ACTA2-006 processed_transcript Homo_sapiens 0 244
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 9.99995e-41 171
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 215
ENST00000488967 ACTA2-005 processed_transcript Homo_sapiens 0 244
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 215
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 7.00649e-45 185
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 6e-38 163

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