C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417593 RPL17P11-001 ENSG00000233445 9606 - 2:233721522-233722065 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonKidneyLiverLungTestisENST00000417593
Transcript ID Bladder Colon Kidney Liver Lung Testis
ENST00000417593 2.209±0.00 1.648±0.00 0.359±0.24 0.941±0.76 0.079±0.00 0.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HK CIL_0007HK_0001 CGP 2:233475520-233773310
CIL_0004L1 CIL_0004L1_0008 CGP 2:233617645-233773310
CIL_0004L1 CIL_0004L1_0009 CGP 2:233636454-233773305
CIL_0004L1 CIL_0004L1_0007 CGP 2:233671853-233773300
CIL_0004L1 CIL_0004L1_000B CGP 2:233681938-233773300
CIL_0004L1 CIL_0004L1_0005 CGP 2:233691607-233773300
CIL_0004L1 CIL_0004L1_0006 CGP 2:233712992-233773299
CIL_0004L1 CIL_0004L1_000C CGP 2:233718778-233773299

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 383
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 377
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 5.00264e-43 178
ENSMUST00000117623 Gm12469-001 processed_pseudogene Mus_musculus 9e-31 137

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