C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 10268
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085340 Gm10268-201 ENSMUSG00000066475 10090 + 18:38244828-38245382 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085340 1.278±0.29 1.319±0.99 0.969±0.07 0.861±0.57 1.020±0.41 0.981±0.36 0.784±0.27 0.912±0.45 1.335±0.97 1.188±0.32 0.154±0.03 1.549±0.98 0.584±0.41 0.364±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QI CIL_0006QI_0002 CGP 18:38185915-38262629

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 538
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 549
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 608
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 549
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 571
ENST00000404382 RP3-472M2.2-001 processed_pseudogene Homo_sapiens 0 322
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 603
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 693
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 414
ENST00000417063 AC020983.5-001 processed_pseudogene Homo_sapiens 0 573
ENST00000417593 RPL17P11-001 processed_pseudogene Homo_sapiens 0 377
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 704
ENST00000419491 RPL17P17-001 processed_pseudogene Homo_sapiens 0 479
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 640
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 431
ENST00000429025 CTA-440B3.1-001 processed_pseudogene Homo_sapiens 0 383
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 0 291
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 612
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 638
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 586
ENST00000452862 AC144530.1-001 processed_pseudogene Homo_sapiens 0 649
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 429
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 532
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 608
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 542
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 704
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 529
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 472
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000490729 RPL17P37-001 processed_pseudogene Homo_sapiens 0 409
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 405
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 682
ENST00000504072 CTD-2218G20.1-001 processed_pseudogene Homo_sapiens 0 200
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 324
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 649
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 704
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 704
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 538
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 660
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 704
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 470
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 540
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 604
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 374
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 289
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 510
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 665
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 608
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 638
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 472
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 2e-38 161
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 359
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 481
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 638
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 704
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 704

Loading