C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 76
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100179 Krt76-001 ENSMUSG00000075402 10090 - 15:101884351-101892920 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainLungMuscleOvaryTestisENSMUST00000100179
Transcript ID Adipose Adrenal Bladder Brain Lung Muscle Ovary Testis
ENSMUST00000100179 0.056±0.03 0.027±0.00 0.020±0.00 0.010±0.01 0.192±0.11 0.027±0.00 0.100±0.09 0.226±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0013 CGP 15:101858732-101892920
CIL_00033Q CIL_00033Q_0018 CGP 15:101884351-101924735

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005198 IEA structural molecule activity
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0045095 IEA keratin filament
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000139071 desma-003 processed_transcript Danio_rerio 5e-19 100
ENSDART00000081553 desma-001 protein_coding Danio_rerio 5e-19 100
ENSDART00000081550 desma-002 protein_coding Danio_rerio 5e-19 100
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0.00000002 66
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0.000000001 69
ENST00000252242 KRT5-001 protein_coding Homo_sapiens 0 647
ENST00000252245 KRT75-001 protein_coding Homo_sapiens 0 496
ENST00000252250 KRT6C-001 protein_coding Homo_sapiens 0 693
ENST00000252252 KRT6B-001 protein_coding Homo_sapiens 0 693
ENST00000257901 KRT85-001 protein_coding Homo_sapiens 4e-30 137
ENST00000267119 KRT71-001 protein_coding Homo_sapiens 0 518
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 0 392
ENST00000293525 KRT86-201 protein_coding Homo_sapiens 2e-23 115
ENST00000293670 KRT83-001 protein_coding Homo_sapiens 2e-23 115
ENST00000304620 KRT78-001 protein_coding Homo_sapiens 0 329
ENST00000327741 KRT81-001 protein_coding Homo_sapiens 2e-23 115
ENST00000330722 KRT6A-001 protein_coding Homo_sapiens 0 699
ENST00000331817 KRT7-001 protein_coding Homo_sapiens 0 453
ENST00000332411 KRT76-001 protein_coding Homo_sapiens 0 1338
ENST00000359499 KRT78-002 protein_coding Homo_sapiens 0 268
ENST00000396270 KRT8P39-001 processed_pseudogene Homo_sapiens 0 222
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 0 259
ENST00000414254 KRT8P14-001 processed_pseudogene Homo_sapiens 0 215
ENST00000414328 KRT8P45-001 processed_pseudogene Homo_sapiens 0 305
ENST00000417996 KRT3-001 protein_coding Homo_sapiens 0 996
ENST00000420409 KRT8P29-001 processed_pseudogene Homo_sapiens 7e-16 90
ENST00000423953 KRT8P20-001 processed_pseudogene Homo_sapiens 9e-30 135
ENST00000423955 KRT86-001 protein_coding Homo_sapiens 2e-23 115
ENST00000425226 KRT8P15-001 processed_pseudogene Homo_sapiens 0 244
ENST00000430398 KRT8P21-001 processed_pseudogene Homo_sapiens 0.00000000000001 86
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 0 244
ENST00000468527 KRT8P12-002 processed_transcript Homo_sapiens 0.0000000000003 81
ENST00000472924 KRT8P12-001 transcribed_processed_pseudogene Homo_sapiens 2e-31 141
ENST00000473150 KRT8P25-001 processed_pseudogene Homo_sapiens 0 193
ENST00000478317 VIM-004 processed_transcript Homo_sapiens 0.0000000006 69
ENST00000478746 VIM-005 processed_transcript Homo_sapiens 0.0000000005 69
ENST00000485947 VIM-007 processed_transcript Homo_sapiens 0.0000000007 69
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0.000000001 69
ENST00000489121 KRT8P36-001 processed_pseudogene Homo_sapiens 0 248
ENST00000508125 KRT8P33-001 processed_pseudogene Homo_sapiens 0 326
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 0 241
ENST00000512863 KRT8P32-001 processed_pseudogene Homo_sapiens 0 287
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 0 398
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 0 307
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0.000000001 69
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 1e-35 156
ENST00000546826 KRT8-013 protein_coding Homo_sapiens 0 237
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 0 392
ENST00000547110 KRT78-003 protein_coding Homo_sapiens 8.00001e-42 174
ENST00000547413 KRT8-016 protein_coding Homo_sapiens 3e-36 156
ENST00000547890 KRT5-010 retained_intron Homo_sapiens 0 224
ENST00000548409 KRT5-008 protein_coding Homo_sapiens 0 399
ENST00000548998 KRT8-014 protein_coding Homo_sapiens 3e-37 159
ENST00000549511 KRT5-009 retained_intron Homo_sapiens 0 399
ENST00000549600 KRT6A-004 retained_intron Homo_sapiens 0 222
ENST00000549754 KRT6A-003 retained_intron Homo_sapiens 0 298
ENST00000549898 KRT6A-002 retained_intron Homo_sapiens 0 257
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 1e-35 156
ENST00000551013 KRT5-006 retained_intron Homo_sapiens 0 204
ENST00000551188 KRT5-007 protein_coding Homo_sapiens 0 250
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 0 392
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 0 392
ENST00000552629 KRT5-002 retained_intron Homo_sapiens 0 651
ENST00000553087 KRT6C-002 retained_intron Homo_sapiens 0 230
ENST00000553310 KRT86-002 protein_coding Homo_sapiens 4e-24 115
ENST00000615839 KRT81-201 protein_coding Homo_sapiens 1e-23 115
ENST00000620027 KRT123P-001 transcribed_unprocessed_pseudogene Homo_sapiens 2e-21 108
ENST00000621314 KRT123P-002 processed_transcript Homo_sapiens 0.000000004 66

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