C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425640 RPL5P6-001 ENSG00000232393 9606 + 1:91023919-91024804 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyMuscleOvaryTestisENST00000425640
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000425640 0.052±0.00 0.123±0.00 0.057±0.00 0.013±0.00 0.040±0.00 0.050±0.00 0.013±0.00 0.040±0.00 0.109±0.00 0.125±0.00 0.059±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000906 CIL_000906_0001 VISTA 1:90540005-91141658
CIL_000699 CIL_000699_0001 CGP 1:90915298-91404869

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 1035
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 1035
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 1035
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 1029
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 983
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 719
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 597
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000140659 Rpl5-005 retained_intron Mus_musculus 0 442
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000151767 Rpl5-006 retained_intron Mus_musculus 0 239
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 0 228
ENSMUST00000121897 Gm15877-001 processed_pseudogene Mus_musculus 0 204

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