C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 19840
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169624 Gm19840-001 ENSMUSG00000091194 10090 + 15:22935487-22937241 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverOvaryPlacentaENSMUST00000169624
Transcript ID Adipose Bladder Brain Breast Kidney Liver Ovary Placenta
ENSMUST00000169624 0.065±0.01 0.030±0.02 0.154±0.14 0.256±0.00 0.054±0.00 0.008±0.00 0.069±0.00 0.044±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XA CIL_0003XA_0003 CGP 15:21111452-23474418

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315741 RPL5-006 protein_coding Homo_sapiens 0 477
ENST00000370321 RPL5-001 protein_coding Homo_sapiens 0 749
ENST00000392009 RPL5P5-001 processed_pseudogene Homo_sapiens 0 595
ENST00000396820 RPL5P8-001 processed_pseudogene Homo_sapiens 5.60519e-45 185
ENST00000425640 RPL5P6-001 processed_pseudogene Homo_sapiens 0 588
ENST00000426545 RPL5P34-001 processed_pseudogene Homo_sapiens 0 665
ENST00000437011 RPL5P27-001 processed_pseudogene Homo_sapiens 0 425
ENST00000441148 RPL5P25-001 processed_pseudogene Homo_sapiens 0 512
ENST00000454085 RPL5P32-001 processed_pseudogene Homo_sapiens 0 497
ENST00000460716 RPL5P1-001 processed_pseudogene Homo_sapiens 0 628
ENST00000461952 RPL5-004 retained_intron Homo_sapiens 0 305
ENST00000463742 RPL5P24-001 processed_pseudogene Homo_sapiens 0 547
ENST00000465511 RPL5P30-001 processed_pseudogene Homo_sapiens 0 606
ENST00000469685 RPL5P17-001 processed_pseudogene Homo_sapiens 0 520
ENST00000470843 RPL5-003 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000477071 RPL5P12-001 processed_pseudogene Homo_sapiens 0 566
ENST00000482972 RPL5P29-001 processed_pseudogene Homo_sapiens 0 599
ENST00000496040 RPL5P23-001 processed_pseudogene Homo_sapiens 0 536
ENST00000498068 RPL5P11-001 processed_pseudogene Homo_sapiens 0 302

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