C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A1 pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428832 EIF4A1P10-001 ENSG00000229132 9606 - X:92113246-92114461 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverMuscleOvaryPlacentaENST00000428832
Transcript ID Adipose Brain Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000428832 0.048±0.00 0.068±0.00 0.036±0.00 0.011±0.00 0.013±0.00 0.034±0.00 0.033±0.00 0.213±0.00 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B8 CIL_0007B8_0001 CGP X:91434595-92623230

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163666 Eif4a1-001 protein_coding Mus_musculus 0 1648
ENSMUST00000122226 Eif4a-ps4-001 processed_pseudogene Mus_musculus 0 1642
ENSMUST00000072982 Gm5513-201 processed_pseudogene Mus_musculus 0 1519
ENSMUST00000120460 Gm12136-001 processed_pseudogene Mus_musculus 0 1230
ENSMUST00000118589 Gm15568-001 processed_pseudogene Mus_musculus 0 1083
ENSMUST00000128519 Eif4a1-012 retained_intron Mus_musculus 0 1022
ENSMUST00000102589 Eif4a1-013 nonsense_mediated_decay Mus_musculus 0 894
ENSMUST00000121818 Gm12920-001 processed_pseudogene Mus_musculus 0 869
ENSDART00000011878 eif4a1b-001 protein_coding Danio_rerio 0 778
ENSMUST00000123995 Eif4a1-002 retained_intron Mus_musculus 0 632
ENSMUST00000139299 Eif4a1-006 processed_transcript Mus_musculus 0 460
ENSDART00000140602 eif4a1b-002 processed_transcript Danio_rerio 0 451
ENSMUST00000140310 Eif4a1-007 processed_transcript Mus_musculus 0 448
ENSMUST00000142214 Eif4a1-003 processed_transcript Mus_musculus 0 414
ENSMUST00000127677 Eif4a1-008 processed_transcript Mus_musculus 0 363
ENSMUST00000142348 Eif4a1-010 processed_transcript Mus_musculus 0 326
ENSMUST00000145289 Eif4a1-004 retained_intron Mus_musculus 0 281
ENSMUST00000129295 Eif4a1-005 retained_intron Mus_musculus 0 259
ENSMUST00000133067 Eif4a1-009 processed_transcript Mus_musculus 0 254
ENSMUST00000140186 Eif4a1-011 processed_transcript Mus_musculus 0 198

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