C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A, isoform 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000011878 eif4a1b-001 ENSDARG00000003032 7955 - 5:25877348-25888279 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000011878
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000011878 103.953±34.23 186.877±54.04 127.365±35.67 48.095±0.00 134.449±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003743 IEA translation initiation factor activity
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0006412 IEA translation
GO:0006413 IEA translational initiation
GO:0008026 IEA ATP-dependent helicase activity
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102589 Eif4a1-013 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000120460 Gm12136-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000121818 Gm12920-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000122226 Eif4a-ps4-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000123995 Eif4a1-002 retained_intron Mus_musculus 4.00001e-41 174
ENSMUST00000127677 Eif4a1-008 processed_transcript Mus_musculus 0 248
ENSMUST00000128519 Eif4a1-012 retained_intron Mus_musculus 0 486
ENSMUST00000129295 Eif4a1-005 retained_intron Mus_musculus 3.00018e-42 176
ENSMUST00000139299 Eif4a1-006 processed_transcript Mus_musculus 0 305
ENSMUST00000140310 Eif4a1-007 processed_transcript Mus_musculus 0 307
ENSMUST00000142214 Eif4a1-003 processed_transcript Mus_musculus 0 300
ENSMUST00000145289 Eif4a1-004 retained_intron Mus_musculus 0 204
ENSMUST00000163666 Eif4a1-001 protein_coding Mus_musculus 0 822
ENST00000293831 EIF4A1-001 protein_coding Homo_sapiens 0 839
ENST00000422633 EIF4A1P2-001 processed_pseudogene Homo_sapiens 0 756
ENST00000428832 EIF4A1P10-001 processed_pseudogene Homo_sapiens 0 778
ENST00000577269 EIF4A1-007 protein_coding Homo_sapiens 0 676
ENST00000577738 EIF4A1-016 retained_intron Homo_sapiens 0 291
ENST00000577929 EIF4A1-018 protein_coding Homo_sapiens 0 254
ENST00000578324 EIF4A1-009 retained_intron Homo_sapiens 0 676
ENST00000578476 EIF4A1-014 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000578495 EIF4A1-026 protein_coding Homo_sapiens 0 562
ENST00000579085 EIF4A1-019 retained_intron Homo_sapiens 1e-29 134
ENST00000579139 EIF4A1-013 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000580461 EIF4A1-002 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000580886 EIF4A1-012 retained_intron Homo_sapiens 3e-30 135
ENST00000580888 EIF4A1-038 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000581384 EIF4A1-037 protein_coding Homo_sapiens 0 427
ENST00000581544 EIF4A1-004 nonsense_mediated_decay Homo_sapiens 2.94273e-44 183
ENST00000581770 EIF4A1-015 protein_coding Homo_sapiens 0 215
ENST00000582169 EIF4A1-024 protein_coding Homo_sapiens 0 316
ENST00000582213 EIF4A1-021 retained_intron Homo_sapiens 0 235
ENST00000582746 EIF4A1-008 protein_coding Homo_sapiens 0 675
ENST00000582848 EIF4A1-027 retained_intron Homo_sapiens 0 339
ENST00000583802 EIF4A1-022 protein_coding Homo_sapiens 0 372
ENST00000583899 EIF4A1-020 retained_intron Homo_sapiens 1e-29 134
ENST00000584054 EIF4A1-011 retained_intron Homo_sapiens 4.2039e-45 185
ENST00000584712 EIF4A1-036 retained_intron Homo_sapiens 0 287
ENST00000584784 EIF4A1-028 protein_coding Homo_sapiens 0 427
ENST00000584860 EIF4A1-017 protein_coding Homo_sapiens 0 527
ENST00000584901 EIF4A1-006 retained_intron Homo_sapiens 0 366
ENST00000585024 EIF4A1-025 protein_coding Homo_sapiens 0 387
ENST00000614237 SENP3-EIF4A1-001 nonsense_mediated_decay Homo_sapiens 0 839

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