C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429025 CTA-440B3.1-001 ENSG00000236132 9606 - 22:31816379-31817491 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverLungOvaryTestisENST00000429025
Transcript ID Brain Colon Heart Liver Lung Ovary Testis
ENST00000429025 0.028±0.00 0.051±0.00 0.051±0.00 0.153±0.00 0.127±0.00 0.135±0.01 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NJ CIL_0002NJ_0001 CGP 22:31676256-31907034

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 399
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 383
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 311
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000117990 Gm7831-001 processed_pseudogene Mus_musculus 0 252

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