C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 73
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446472 HNRNPA1P73-001 ENSG00000236569 9606 - 7:27328607-27329534 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyENST00000446472
Transcript ID Adipose Adrenal Brain Breast Colon Kidney
ENST00000446472 0.014±0.00 0.015±0.00 0.031±0.00 0.015±0.00 0.027±0.00 0.030±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003P6 CIL_0003P6_0001 CGP 7:27242700-27662995

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 885
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 885
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 819
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 798
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 697
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 697
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 316

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