C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type III, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100069 Scn3a-001 ENSMUSG00000057182 10090 - 2:65458263-65567627 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100069 0.051±0.02 0.409±0.21 0.068±0.01 6.049±1.67 0.130±0.06 0.503±0.13 0.280±0.04 0.072±0.02 0.047±0.03 6.684±1.96 0.074±0.03 0.400±0.13 0.015±0.01 0.078±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CP CIL_0006CP_0002 CGP 2:65316430-65567627
CIL_0006CO CIL_0006CO_0002 CGP 2:65457118-65767447

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IBA voltage-gated sodium channel activity
GO:0005737 IDA cytoplasm
GO:0005886 IBA plasma membrane
GO:0016020 IDA membrane
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IBA sodium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 647
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 647
ENSDART00000106534 scn4aa-001 protein_coding Danio_rerio 0 481
ENSDART00000011718 scn1a-201 protein_coding Danio_rerio 0 381
ENSDART00000090979 scn1a-202 protein_coding Danio_rerio 0 381
ENSDART00000128198 SCN3A-201 protein_coding Danio_rerio 0 381
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 326
ENSDART00000022382 SCN3A-202 protein_coding Danio_rerio 0 298
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 5029
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 3326
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 1818
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 2972
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 870
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 438
ENST00000355133 SCN8A-005 protein_coding Homo_sapiens 0 438
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 5029
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 2972
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 3326
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 3326
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 2972
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 7413
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 1818
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 1818
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 870
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 0 776
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 2972
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 870
ENST00000424833 SCN2A-003 protein_coding Homo_sapiens 0 1312
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 776
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 1177
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 5173
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 870
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 870
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 0 870
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 870
ENST00000452182 SCN9A-003 protein_coding Homo_sapiens 0 403
ENST00000453007 SCN3A-003 protein_coding Homo_sapiens 0 946
ENST00000454569 SCN9A-002 protein_coding Homo_sapiens 0 403
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 0 564
ENST00000465043 SCN3A-007 processed_transcript Homo_sapiens 0 370
ENST00000471697 SCN3A-006 retained_intron Homo_sapiens 0 601
ENST00000473295 SCN1A-005 retained_intron Homo_sapiens 0 274
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 1447
ENST00000486878 SCN2A-004 retained_intron Homo_sapiens 0 372
ENST00000507401 SCN1A-007 retained_intron Homo_sapiens 0 261
ENST00000545061 SCN8A-201 protein_coding Homo_sapiens 0 438
ENST00000550891 SCN8A-003 protein_coding Homo_sapiens 0 527
ENST00000551216 SCN8A-004 protein_coding Homo_sapiens 0 364
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 1166
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 444

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