C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5 pseudogene 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469685 RPL5P17-001 ENSG00000243859 9606 + 5:85464434-85465310 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000469685
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000469685 0.064±0.00 0.040±0.00 0.057±0.00 0.013±0.00 0.051±0.00 0.084±0.00 0.012±0.00 0.013±0.00 0.059±0.00 0.012±0.00 0.047±0.00 0.015±0.00 0.060±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TM CIL_0005TM_0002 CGP 5:83940554-86620962

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 942
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 942
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 941
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 902
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 896
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 676
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 555
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000121897 Gm15877-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000140659 Rpl5-005 retained_intron Mus_musculus 0 390
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 0 244
ENSMUST00000151767 Rpl5-006 retained_intron Mus_musculus 0 241

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