C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486001 RP11-4K3__A.5-001 ENSG00000241547 9606 + 1:27325329-27325796 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000486001
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000486001 0.262±0.00 0.919±0.00 0.217±0.00 0.470±0.00 0.605±0.41 0.085±0.00 0.452±0.00 0.207±0.12 0.095±0.00 0.081±0.00 0.633±0.28 0.189±0.06 0.494±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 499
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 499
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 475
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 475
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 464
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 455
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 455
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 444
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 438
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 433
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 392
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 351
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 246
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 246
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 246
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 246
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 239

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