C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000054987 actb1-001 ENSDARG00000037746 7955 - 1:7725183-7728816 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000054987
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000054987 424.011±37.83 262.646±241.46 472.938±496.22 35.317±0.00 299.679±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1109
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 953
ENSMUST00000054716 Actbl2-201 protein_coding Mus_musculus 0 839
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 407
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1245
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 933
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1016
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1197
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 9e-19 97
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 1020
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 442
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1351
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1245
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 510
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 795
ENSMUST00000119420 Gm4918-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 756
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 1011
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 983
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1245
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 933
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 0 195
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 808
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 828
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 654
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 824
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 824
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 481
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 828
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 302
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 412
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 466
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 946
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 926
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 944
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1277
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1256
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1037
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 1133
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 1122
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 370
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 981
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 1122
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 944
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 1116
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1037
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 833
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 1122
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 761
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 1068
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 904
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 579
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 852
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 590
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 647
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 837
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 913
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 719
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 822
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 699
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 833
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 307
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 542
ENST00000442912 ACTG2-010 protein_coding Homo_sapiens 0 324
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 942
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 1127
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 944
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 915
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 285
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 433
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 839
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 381
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 691
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 837
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 704
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 1064
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 346
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 346
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 745
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 830
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1256
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 902
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1256
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1256
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1168
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 536
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1256
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 405
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1256

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