C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000141737 actb2-001 ENSDARG00000037870 7955 - 3:40520889-40524586 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000141737
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000141737 1375.855±341.67 2485.280±1344.97 2478.610±0.00 637.507±0.00 1136.180±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1094
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1042
ENSMUST00000054716 Actbl2-201 protein_coding Mus_musculus 0 817
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 424
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1245
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 981
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1085
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1181
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 294
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 442
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1384
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1245
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 529
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 1070
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 977
ENSMUST00000120078 Gm16423-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1245
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 981
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 808
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 876
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 874
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 874
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 876
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 0 209
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 291
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 411
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 505
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 981
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 946
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 815
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1352
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1321
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1109
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 453
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1068
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1109
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 904
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 948
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 841
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 817
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 861
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 913
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 392
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 693
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 870
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 948
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 977
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 728
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 830
ENST00000431775 ACTG1P3-001 processed_pseudogene Homo_sapiens 0 756
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 989
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 904
ENST00000440793 AC023672.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 531
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 913
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 979
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 595
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 608
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 1026
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 455
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 881
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 946
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 680
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 859
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 715
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 1120
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 368
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 701
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 715
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 510
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 869
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1321
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 961
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1321
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 699
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1321
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 702
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1232
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 366
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1321
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 889
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1321

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