C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 123
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493028 RPL21P123-001 ENSG00000240531 9606 - 17:29716279-29716685 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000493028
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000493028 0.117±0.00 1.103±0.00 0.087±0.00 0.856±0.66 0.254±0.12 0.195±0.00 0.115±0.00 0.246±0.09 7.393±0.00 0.027±0.00 1.192±0.00 0.065±0.00 0.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BZ CIL_0009BZ_0001 VISTA 17:29367684-29969856
CIL_000873 CIL_000873_0001 VISTA 17:29367702-29969870

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 327
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 305
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 305
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 305
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 300
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 300
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 300
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 294
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 289
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 272
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 267
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 1.00053e-42 176
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 5e-37 158
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 7e-16 88

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