C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin (nucleolar phosphoprotein B23, numatrin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000517671 NPM1-004 ENSG00000181163 9606 + 5:171387116-171410883 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000517671
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000517671 78.916±0.00 91.377±0.00 33.339±0.00 44.433±2.92 55.929±0.00 83.052±56.30 41.933±0.00 55.290±17.65 59.202±23.32 80.333±23.24 41.166±33.00 226.892±188.23 273.838±156.19 233.688±131.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417
CIL_00097F CIL_00097F_0001 VISTA 5:170900986-171503014
CIL_00092S CIL_00092S_0001 VISTA 5:171022159-171623481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003713 IDA transcription coactivator activity
GO:0003723 IDA RNA binding
GO:0004860 IDA protein kinase inhibitor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 ISS cytoplasm
GO:0005813 ISS centrosome
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0006281 IDA DNA repair
GO:0006334 IDA nucleosome assembly
GO:0006886 TAS intracellular protein transport
GO:0006913 TAS nucleocytoplasmic transport
GO:0006950 IMP response to stress
GO:0007098 ISS centrosome cycle
GO:0007165 NAS signal transduction
GO:0007569 ISS cell aging
GO:0008104 IDA protein localization
GO:0008285 ISS negative regulation of cell proliferation
GO:0010826 IMP negative regulation of centrosome duplication
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0019901 IPI protein kinase binding
GO:0030529 IDA ribonucleoprotein complex
GO:0030957 IDA Tat protein binding
GO:0031616 IDA spindle pole centrosome
GO:0032071 IDA regulation of endodeoxyribonuclease activity
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0042255 TAS ribosome assembly
GO:0042393 IDA histone binding
GO:0042803 IDA protein homodimerization activity
GO:0043023 IDA ribosomal large subunit binding
GO:0043024 IDA ribosomal small subunit binding
GO:0043066 IDA negative regulation of apoptotic process
GO:0044387 IDA negative regulation of protein kinase activity by regulation of protein phosphorylation
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation
GO:0046599 IMP regulation of centriole replication
GO:0046982 IMP protein heterodimerization activity
GO:0051059 ISS NF-kappaB binding
GO:0051082 ISS unfolded protein binding
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0051259 IDA protein oligomerization
GO:0060699 IDA regulation of endoribonuclease activity
GO:0060735 IDA regulation of eIF2 alpha phosphorylation by dsRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 1555
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 996
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 994
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 904
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 872
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 828
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 822
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 736
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 708
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 0 562
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 294

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