C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546565 HNRNPA1P50-001 ENSG00000257195 9606 + 12:92883773-92884700 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000546565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000546565 0.028±0.00 0.193±0.00 0.041±0.00 0.153±0.00 0.124±0.03 0.186±0.09 0.097±0.00 0.236±0.22 0.158±0.00 0.101±0.06 0.083±0.00 0.034±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1029
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1027
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 976
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 952
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 950
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 915
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 830
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 798
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 797
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 769
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 632
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 3e-33 147

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