C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580106 HNRNPA1P11-001 ENSG00000264315 9606 + 18:72618267-72619222 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyPlacentaTestisENST00000580106
Transcript ID Adrenal Brain Breast Kidney Placenta Testis
ENST00000580106 0.046±0.00 0.047±0.00 0.031±0.00 0.015±0.00 0.022±0.00 0.036±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001A CIL_00001A_0003 CGP 18:70288901-72638521

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1040
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1040
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 994
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 979
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 970
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 944
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 795
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 795
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 407

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