C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058914 Tuba1c-201 ENSMUSG00000043091 10090 + 15:99029891-99038105 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058914
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058914 12.661±5.41 31.440±3.26 53.170±24.08 9.095±0.00 15.498±0.84 33.851±3.10 7.029±0.68 15.904±1.80 108.888±125.34 11.791±0.90 0.982±0.27 26.047±4.42 72.541±37.08 36.712±15.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009R CIL_00009R_0002 CGP 15:99029891-99058978

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005881 IDA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0008150 ND biological_process
GO:0031982 IEA vesicle
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1522
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1519
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1506
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 1351
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1240
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 1221
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 1170
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 627
ENSDART00000122569 tuba8l2-002 processed_transcript Danio_rerio 0 403
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 363
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 351
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 1506
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 1949
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 1947
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 2128
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 1378
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1406
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 2015
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 2021
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 1502
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 623
ENST00000425085 TUBAP-001 processed_pseudogene Homo_sapiens 0 1061
ENST00000437364 RP11-346M5.1-001 processed_pseudogene Homo_sapiens 0 1129
ENST00000445574 RP11-184J23.2-001 processed_pseudogene Homo_sapiens 0 1142
ENST00000472881 RP11-959F10.5-001 processed_pseudogene Homo_sapiens 0 933
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 1286
ENST00000490341 TUBA4B-001 processed_transcript Homo_sapiens 0 1075
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 828
ENST00000501221 RP11-447H19.1-001 processed_pseudogene Homo_sapiens 0 1437
ENST00000505780 CTD-2158P22.4-001 processed_pseudogene Homo_sapiens 0 545
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 0 616
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 1851
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 2023
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 0 706
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 520
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 2015
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 1092
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 0 568
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 1583
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 0 616
ENST00000549818 TUBA1C-008 nonsense_mediated_decay Homo_sapiens 2e-23 113
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 553
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 0 364
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 651
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 1943
ENST00000550811 TUBA1A-010 protein_coding Homo_sapiens 0 303
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 0 361
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 2023
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 671
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 0 398
ENST00000559595 RP11-522B15.6-001 processed_pseudogene Homo_sapiens 0 516
ENST00000569261 TUBA8P2-001 transcribed_processed_pseudogene Homo_sapiens 0 379
ENST00000611325 RP11-386G11.11-001 processed_pseudogene Homo_sapiens 0 244

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