C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442115 RP11-11M20.2-001 ENSG00000235018 9606 - 20:62037429-62037956 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungMuscleOvaryTestisENST00000442115
Transcript ID Bladder Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000442115 1.642±0.00 0.090±0.02 1.337±0.00 0.093±0.00 0.690±0.00 0.916±0.00 0.672±0.00 0.339±0.34 0.181±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0002 CGP 20:61252426-62065810
CIL_0001DN CIL_0001DN_0001 CGP 20:61953469-62135378

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 296
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 291
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 9e-36 154
ENSMUST00000118691 Gm11199-001 processed_pseudogene Mus_musculus 9e-36 154
ENSMUST00000178259 1600029O15Rik-001 transcribed_processed_pseudogene Mus_musculus 7e-32 141
ENSMUST00000179787 1600029O15Rik-002 processed_transcript Mus_musculus 7e-32 141
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 4e-29 132
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 7e-22 108
ENSMUST00000121479 Gm12566-001 processed_pseudogene Mus_musculus 9e-16 88

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