C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462494 ACTB-003 ENSG00000075624 9606 - 7:5527156-5530601 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartENST00000462494
Transcript ID Bladder Heart
ENST00000462494 12.127±0.00 6.613±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_0002V9 CIL_0002V9_0001 CGP 7:5431335-5563784
CIL_0002V8 CIL_0002V8_0001 CGP 7:5527151-5606655

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1360
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 1147
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1147
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 979
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 979
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 972
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 972
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 970
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 968
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 948
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 920
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 915
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 915
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 880
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 798
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 789
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 787
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 780
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 776
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 747
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 747
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 736
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 721
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 721
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 721
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 721
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 717
ENSDART00000080664 protein_coding Danio_rerio 0 715
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 688
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 621
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 599
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 547
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 520
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 486
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 484
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 466
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 453
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 451
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 449
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 399
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 357
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 339
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 311
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 305
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 0 281
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 0 215

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