C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464611 ACTB-013 ENSG00000075624 9606 - 7:5527151-5528098 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000464611
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000464611 3204.210±0.00 3235.960±0.00 1686.100±0.00 2361.360±0.00 4399.980±0.00 223.468±0.00 1168.960±0.00 747.063±0.00 2389.490±0.00 251.487±0.00 2956.070±0.00 2154.970±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_0002V9 CIL_0002V9_0001 CGP 7:5431335-5563784
CIL_0002V8 CIL_0002V8_0001 CGP 7:5527151-5606655

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 366
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 366
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 350
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 350
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 350
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 348
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 337
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 316
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 316
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 311
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 311
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 303
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 287
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 285
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 281
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 276
ENSDART00000080664 protein_coding Danio_rerio 0 270
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 257
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 257
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 206
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 206
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 202
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 202
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 3e-26 122

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