C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ED_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120278-ENSG00000120254 CGP 9606 6:150599863-151101887
GeneTranscriptPositionBiotype
ENSG00000120254 (MTHFD1L)
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 		ENST00000367307 (MTHFD1L-012) 150865716-150899021 protein_coding
ENST00000367308 (MTHFD1L-008) 150865944-150926153 protein_coding
ENST00000367321 (MTHFD1L-003) 150865549-151101887 protein_coding
ENST00000420192 (MTHFD1L-007) 151014880-151022355 protein_coding
ENST00000421497 (MTHFD1L-005) 150905670-150912948 processed_transcript
ENST00000423867 (MTHFD1L-009) 150866557-150887873 protein_coding
ENST00000441122 (MTHFD1L-004) 150866506-150936915 nonsense_mediated_decay
ENST00000450635 (MTHFD1L-002) 151036974-151042058 protein_coding
ENST00000453602 (MTHFD1L-001) 151034532-151042064 protein_coding
ENST00000478643 (MTHFD1L-006) 150971948-151009958 processed_transcript
ENST00000611279 (MTHFD1L-201) 150865679-151101885 protein_coding
ENST00000618312 (MTHFD1L-202) 150866333-151101885 protein_coding
ENSG00000120278 (PLEKHG1)
pleckstrin homology domain containing, family G (with RhoGef domain) member 1 		ENST00000358517 (PLEKHG1-001) 150721088-150843665 protein_coding
ENST00000367326 (PLEKHG1-003) 150599883-150733821 protein_coding
ENST00000367328 (PLEKHG1-201) 150599863-150843663 protein_coding
ENST00000475490 (PLEKHG1-002) 150768686-150842056 nonsense_mediated_decay
ENSG00000202119 (RNU6-302P)
RNA, U6 small nuclear 302, pseudogene 		ENST00000365249 (RNU6-302P-201) 150939222-150939328 snRNA
ENSG00000213089 (PDCL3P5)
phosducin-like 3 pseudogene 5 		ENST00000398028 (PDCL3P5-001) 150827663-150828384 processed_pseudogene
ENSG00000218996 (RP1-99E18.2)
 ENST00000404372 (RP1-99E18.2-001) 150934968-150935566 processed_pseudogene
ENSG00000219747 (RP1-292B18.1)
 ENST00000405720 (RP1-292B18.1-001) 151099529-151099933 processed_pseudogene
ENSG00000223598 (RP1-292B18.4)
 ENST00000415477 (RP1-292B18.4-001) 151088103-151228447 antisense
ENSG00000224029 (RP11-136K14.2)
 ENST00000456018 (RP11-136K14.2-001) 150624677-150626086 sense_intronic
ENSG00000232290 (RP1-292B18.3)
 ENST00000445833 (RP1-292B18.3-001) 151054897-151056057 antisense
ENSG00000232891 (RP11-136K14.1)
 ENST00000430770 (RP11-136K14.1-001) 150600834-150605850 sense_intronic
CIL_0005ED_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040624-ENSMUSG00000040675 CGP 10090 10:3740364-4167081
GeneTranscriptPositionBiotype
ENSMUSG00000040624 (Plekhg1)
pleckstrin homology domain containing, family G (with RhoGef domain) member 1 		ENSMUST00000042438 (Plekhg1-201) 3872667-3967303 protein_coding
ENSMUST00000120274 (Plekhg1-001) 3740364-3967303 protein_coding
ENSMUST00000131525 (Plekhg1-006) 3903582-3919362 retained_intron
ENSMUST00000136671 (Plekhg1-002) 3872667-3964549 protein_coding
ENSMUST00000137111 (Plekhg1-005) 3740665-3938577 retained_intron
ENSMUST00000141367 (Plekhg1-007) 3957891-3963526 nonsense_mediated_decay
ENSMUST00000144543 (Plekhg1-004) 3740378-3938595 retained_intron
ENSMUST00000154727 (Plekhg1-003) 3903586-3967298 protein_coding
ENSMUSG00000040675 (Mthfd1l)
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 		ENSMUST00000043735 (Mthfd1l-002) 3973144-4156111 protein_coding
ENSMUST00000117291 (Mthfd1l-001) 3973118-4156111 protein_coding
ENSMUST00000120585 (Mthfd1l-003) 3973131-4167081 protein_coding
ENSMUST00000154517 (Mthfd1l-004) 4032280-4048951 processed_transcript
ENSMUSG00000065792 (Gm25515)
predicted gene, 25515 		ENSMUST00000083858 (Gm25515-201) 4104313-4104469 snRNA
ENSMUSG00000082123 (Gm16149)
predicted gene 16149 		ENSMUST00000117631 (Gm16149-001) 3869299-3869607 processed_pseudogene
ENSMUSG00000082247 (Gm16074)
predicted gene 16074 		ENSMUST00000119524 (Gm16074-001) 3992371-3992814 processed_pseudogene
ENSMUSG00000082605 (Gm16148)
predicted gene 16148 		ENSMUST00000119653 (Gm16148-001) 3946199-3947091 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ED_0001ENSG00000120254ENST00000367307ENST00000367308ENST00000367321ENST00000420192ENST00000421497ENST00000423867ENST00000441122ENST00000450635ENST00000453602ENST00000478643ENST00000611279ENST00000618312ENSG00000120278ENST00000358517ENST00000367326ENST00000367328ENST00000475490ENSG00000202119ENST00000365249ENSG00000213089ENST00000398028ENSG00000218996ENST00000404372ENSG00000219747ENST00000405720ENSG00000223598ENST00000415477ENSG00000224029ENST00000456018ENSG00000232290ENST00000445833ENSG00000232891ENST00000430770CIL_0005ED_0002ENSMUSG00000040624ENSMUST00000042438ENSMUST00000120274ENSMUST00000131525ENSMUST00000136671ENSMUST00000137111ENSMUST00000141367ENSMUST00000144543ENSMUST00000154727ENSMUSG00000040675ENSMUST00000043735ENSMUST00000117291ENSMUST00000120585ENSMUST00000154517ENSMUSG00000065792ENSMUST00000083858ENSMUSG00000082123ENSMUST00000117631ENSMUSG00000082247ENSMUST00000119524ENSMUSG00000082605ENSMUST00000119653
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ED_0001ENSG00000120254ENST00000367307ENST00000367308ENST00000367321ENST00000423867ENST00000441122ENST00000453602ENST00000611279ENST00000618312ENSG00000120278ENST00000358517ENST00000367328ENSG00000202119ENST00000365249ENSG00000213089ENST00000398028ENSG00000218996ENST00000404372ENSG00000219747ENST00000405720ENSG00000223598ENST00000415477ENSG00000224029ENST00000456018ENSG00000232290ENST00000445833ENSG00000232891ENST00000430770CIL_0005ED_0002ENSMUSG00000040624ENSMUST00000042438ENSMUST00000120274ENSMUST00000136671ENSMUST00000154727ENSMUSG00000040675ENSMUST00000043735ENSMUST00000117291ENSMUST00000120585ENSMUST00000154517ENSMUSG00000065792ENSMUST00000083858ENSMUSG00000082123ENSMUST00000117631ENSMUSG00000082247ENSMUST00000119524ENSMUSG00000082605ENSMUST00000119653
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120254 ENST00000367307 3.316±0.00 5.115±0.00 N/A 1.919±0.00 N/A 2.408±0.00 N/A 2.018±0.00 0.676±0.00 13.312±0.00 N/A N/A 4.184±0.45 2.936±0.00
ENST00000367308 N/A N/A N/A N/A N/A N/A 0.465±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000367321 0.876±0.00 N/A N/A 2.137±0.00 1.527±0.93 3.032±0.00 N/A 0.625±0.00 N/A N/A N/A 6.482±3.08 2.343±0.00 1.570±0.00
ENST00000420192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423867 N/A N/A N/A N/A N/A N/A N/A N/A 1.099±0.00 N/A N/A N/A N/A N/A
ENST00000441122 N/A N/A 0.632±0.00 N/A 1.306±0.00 1.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.334±0.00 N/A N/A N/A
ENST00000478643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611279 N/A N/A N/A 0.359±0.00 N/A 0.465±0.00 0.227±0.15 2.546±0.00 0.198±0.00 13.538±0.00 0.242±0.00 16.950±0.00 5.324±0.00 3.240±0.00
ENST00000618312 2.794±0.00 5.954±0.00 0.301±0.00 0.989±0.05 1.243±0.00 N/A 0.122±0.09 0.431±0.00 0.821±0.00 0.490±0.00 N/A 9.269±5.00 5.333±0.56 2.563±0.00
ENSG00000120278 ENST00000358517 N/A 1.121±0.00 1.077±0.00 1.113±0.26 N/A N/A 1.646±0.00 1.249±0.13 N/A 5.929±0.00 0.992±0.31 1.080±0.22 0.980±0.14 1.426±0.07
ENST00000367326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000367328 10.905±0.00 3.597±0.00 N/A 1.362±0.00 3.290±0.80 1.993±0.85 0.629±0.45 1.450±0.00 0.814±0.22 1.550±0.00 N/A 3.332±1.52 2.181±0.43 1.534±0.49
ENST00000475490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202119 ENST00000365249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.477±0.00 N/A N/A
ENSG00000213089 ENST00000398028 0.712±0.00 0.446±0.00 0.713±0.00 0.079±0.00 0.318±0.24 0.089±0.00 0.047±0.01 0.435±0.34 0.112±0.06 0.814±0.42 N/A 0.643±0.47 0.145±0.07 0.412±0.36
ENSG00000218996 ENST00000404372 0.072±0.00 0.073±0.00 N/A 0.145±0.00 0.292±0.00 N/A 0.043±0.00 N/A 0.515±0.00 0.566±0.28 N/A 0.511±0.50 0.107±0.04 0.135±0.09
ENSG00000219747 ENST00000405720 0.255±0.00 0.092±0.00 N/A 0.194±0.00 0.722±0.48 0.088±0.00 0.122±0.00 0.094±0.00 0.042±0.00 0.635±0.00 0.556±0.00 2.211±2.16 0.577±0.44 0.287±0.16
ENSG00000223598 ENST00000415477 N/A 0.049±0.00 N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A 1.092±0.30
ENSG00000224029 ENST00000456018 0.037±0.00 0.018±0.00 N/A 0.130±0.11 0.069±0.00 0.755±0.00 0.101±0.00 0.088±0.00 0.870±0.00 0.076±0.00 N/A 0.202±0.16 N/A 0.017±0.00
ENSG00000232290 ENST00000445833 0.058±0.00 0.136±0.00 N/A N/A 0.361±0.00 N/A N/A N/A 0.023±0.00 N/A 0.025±0.00 0.617±0.27 N/A 0.025±0.00
ENSG00000232891 ENST00000430770 0.234±0.00 N/A 0.211±0.00 0.058±0.00 0.159±0.00 0.074±0.00 0.027±0.00 0.083±0.00 N/A 0.744±0.00 N/A 0.218±0.11 0.077±0.00 0.137±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040624 ENSMUST00000042438 N/A N/A 1.560±0.24 1.250±0.00 2.677±0.00 N/A 0.343±0.00 N/A 0.140±0.04 N/A 0.404±0.19 3.639±0.06 4.136±1.73 0.875±0.23
ENSMUST00000120274 2.345±0.04 0.630±0.24 1.710±0.09 1.631±0.59 1.098±0.34 0.891±0.32 1.149±0.41 1.460±0.52 0.622±0.30 2.843±0.24 0.298±0.17 0.882±0.26 3.652±1.98 0.560±0.33
ENSMUST00000131525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136671 0.887±0.01 0.320±0.04 N/A N/A 1.106±0.17 0.688±0.45 0.277±0.02 0.568±0.05 0.164±0.02 1.023±0.23 N/A 2.083±0.67 N/A 0.517±0.09
ENSMUST00000137111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154727 0.653±0.11 N/A N/A 0.488±0.00 0.462±0.10 N/A 0.364±0.05 0.473±0.00 0.211±0.08 0.983±0.13 0.150±0.03 0.856±0.26 N/A 0.432±0.31
ENSMUSG00000040675 ENSMUST00000043735 0.455±0.37 0.627±0.16 1.679±0.29 0.742±0.49 0.798±0.30 1.074±0.49 0.122±0.05 0.147±0.09 2.791±2.21 0.772±0.00 0.074±0.02 1.643±0.67 2.047±0.79 0.720±0.33
ENSMUST00000117291 0.547±0.44 N/A 4.512±0.24 1.355±0.31 0.736±0.47 0.607±0.19 0.161±0.03 0.261±0.11 10.280±6.05 0.609±0.16 0.151±0.05 1.957±0.95 8.185±4.07 0.487±0.29
ENSMUST00000120585 0.250±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.513±0.00 N/A 0.158±0.00
ENSMUST00000154517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A 19.170±0.00 N/A
ENSMUSG00000065792 ENSMUST00000083858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.713±0.00 N/A
ENSMUSG00000082123 ENSMUST00000117631 0.324±0.00 N/A 0.060±0.00 0.308±0.00 N/A N/A N/A 0.436±0.00 N/A 0.338±0.00 N/A 0.305±0.00 0.862±0.43 N/A
ENSMUSG00000082247 ENSMUST00000119524 N/A N/A 0.187±0.00 0.068±0.01 0.390±0.00 N/A N/A N/A 0.068±0.03 N/A N/A N/A 0.108±0.05 0.112±0.03
ENSMUSG00000082605 ENSMUST00000119653 0.323±0.11 0.342±0.01 0.147±0.00 0.119±0.04 0.445±0.23 0.294±0.11 0.290±0.10 0.197±0.08 0.053±0.03 0.506±0.18 0.078±0.00 0.382±0.18 0.185±0.08 0.108±0.08

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