C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005W2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196588-ENSG00000128285 CGP 9606 22:40410281-40682814
GeneTranscriptPositionBiotype
ENSG00000100359 (SGSM3)
small G protein signaling modulator 3 		ENST00000248929 (SGSM3-001) 40370611-40410289 protein_coding
ENST00000417424 (SGSM3-012) 40408794-40410118 protein_coding
ENST00000427834 (SGSM3-013) 40408313-40409811 protein_coding
ENST00000457767 (SGSM3-004) 40370591-40406223 protein_coding
ENST00000462457 (SGSM3-011) 40408627-40409785 retained_intron
ENST00000467915 (SGSM3-008) 40407339-40408687 retained_intron
ENST00000469719 (SGSM3-010) 40408388-40410047 retained_intron
ENST00000470518 (SGSM3-009) 40407277-40409116 retained_intron
ENST00000478085 (SGSM3-003) 40404113-40410103 retained_intron
ENST00000480830 (SGSM3-005) 40406113-40408409 retained_intron
ENST00000481028 (SGSM3-007) 40407251-40407701 retained_intron
ENST00000481408 (SGSM3-006) 40406438-40408429 retained_intron
ENST00000485962 (SGSM3-002) 40370639-40410108 retained_intron
ENSG00000128285 (MCHR1)
melanin-concentrating hormone receptor 1 		ENST00000249016 (MCHR1-001) 40678750-40682814 protein_coding
ENST00000381433 (MCHR1-003) 40679273-40682083 protein_coding
ENST00000465662 (MCHR1-004) 40680107-40681412 processed_transcript
ENST00000498400 (MCHR1-002) 40679273-40682083 processed_transcript
ENSG00000172912 (COX6B1P3)
cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 3 		ENST00000312310 (COX6B1P3-001) 40569286-40569895 processed_pseudogene
ENSG00000196588 (MKL1)
megakaryoblastic leukemia (translocation) 1 		ENST00000355630 (MKL1-001) 40410281-40636685 protein_coding
ENST00000396617 (MKL1-201) 40410282-40636685 protein_coding
ENST00000402042 (MKL1-002) 40410290-40636691 protein_coding
ENST00000402630 (MKL1-009) 40429351-40463418 protein_coding
ENST00000407029 (MKL1-003) 40410302-40463434 protein_coding
ENST00000422851 (MKL1-006) 40431405-40533811 protein_coding
ENST00000463769 (MKL1-004) 40463228-40636687 processed_transcript
ENST00000466278 (MKL1-005) 40519585-40636702 processed_transcript
ENST00000477468 (MKL1-008) 40411839-40417734 retained_intron
ENST00000614754 (MKL1-202) 40410282-40436310 protein_coding
ENST00000618196 (MKL1-203) 40410288-40533880 protein_coding
ENST00000618417 (MKL1-204) 40411144-40552311 protein_coding
ENST00000620651 (MKL1-205) 40410282-40436310 protein_coding
ENSG00000227413 (RP5-1042K10.12)
 ENST00000442557 (RP5-1042K10.12-001) 40433136-40433641 processed_pseudogene
ENSG00000230071 (RPL4P6)
ribosomal protein L4 pseudogene 6 		ENST00000438116 (RPL4P6-001) 40586700-40588003 processed_pseudogene
ENSG00000231907 (GAPDHP37)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 37 		ENST00000442317 (GAPDHP37-001) 40673484-40674451 processed_pseudogene
ENSG00000232564 (RP4-591N18.2)
 ENST00000417123 (RP4-591N18.2-001) 40521800-40526707 antisense
ENST00000616875 (RP4-591N18.2-003) 40523710-40561397 antisense
ENSG00000272834 (RP5-1042K10.13)
 ENST00000609279 (RP5-1042K10.13-001) 40415003-40415445 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005W2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042292-ENSMUSG00000050164 CGP 10090 15:81012281-81238963
GeneTranscriptPositionBiotype
ENSMUSG00000042292 (Mkl1)
MKL (megakaryoblastic leukemia)/myocardin-like 1 		ENSMUST00000109579 (Mkl1-002) 81012291-81105083 protein_coding
ENSMUST00000123243 (Mkl1-007) 81026419-81190728 retained_intron
ENSMUST00000131235 (Mkl1-005) 81012291-81190723 protein_coding
ENSMUST00000134469 (Mkl1-004) 81012281-81190733 protein_coding
ENSMUST00000135047 (Mkl1-003) 81015854-81045546 protein_coding
ENSMUST00000138769 (Mkl1-010) 81016763-81018188 retained_intron
ENSMUST00000145779 (Mkl1-009) 81020238-81021302 retained_intron
ENSMUST00000147921 (Mkl1-006) 81045133-81190522 retained_intron
ENSMUST00000149582 (Mkl1-001) 81012281-81190757 protein_coding
ENSMUST00000154797 (Mkl1-008) 81022489-81023970 retained_intron
ENSMUSG00000042303 (Sgsm3)
small G protein signaling modulator 3 		ENSMUST00000042506 (Sgsm3-201) 80977765-81012289 protein_coding
ENSMUST00000124845 (Sgsm3-002) 80977799-81012289 processed_transcript
ENSMUST00000132039 (Sgsm3-012) 81010725-81011741 retained_intron
ENSMUST00000134511 (Sgsm3-011) 81010635-81011756 retained_intron
ENSMUST00000134559 (Sgsm3-009) 81009250-81010299 retained_intron
ENSMUST00000137004 (Sgsm3-003) 80977837-81004185 processed_transcript
ENSMUST00000137255 (Sgsm3-006) 80977820-81006497 protein_coding
ENSMUST00000138550 (Sgsm3-007) 81007938-81009950 retained_intron
ENSMUST00000139517 (Sgsm3-001) 80977765-81012289 protein_coding
ENSMUST00000143147 (Sgsm3-005) 80977779-81006515 nonsense_mediated_decay
ENSMUST00000149345 (Sgsm3-010) 81009858-81011889 retained_intron
ENSMUST00000154904 (Sgsm3-008) 81008359-81010536 protein_coding
ENSMUST00000156064 (Sgsm3-004) 80977820-81004185 processed_transcript
ENSMUST00000156783 (Sgsm3-013) 81010877-81011635 retained_intron
ENSMUSG00000047938 (4930483J18Rik)
RIKEN cDNA 4930483J18 gene 		ENSMUST00000138675 (4930483J18Rik-001) 81190774-81192763 processed_transcript
ENSMUST00000138715 (4930483J18Rik-003) 81190853-81192756 processed_transcript
ENSMUSG00000050164 (Mchr1)
melanin-concentrating hormone receptor 1 		ENSMUST00000166855 (Mchr1-201) 81235499-81238963 protein_coding
ENSMUSG00000064587 (Gm25131)
predicted gene, 25131 		ENSMUST00000082653 (Gm25131-201) 81039643-81039793 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005W2_0001ENSG00000100359ENST00000248929ENST00000457767ENSG00000128285ENST00000249016ENST00000381433ENST00000465662ENST00000498400ENSG00000172912ENST00000312310ENSG00000196588ENST00000355630ENST00000614754ENST00000620651ENSG00000227413ENST00000442557ENSG00000230071ENST00000438116ENSG00000231907ENST00000442317ENSG00000232564ENST00000417123ENST00000616875ENSG00000272834ENST00000609279CIL_0005W2_0002ENSMUSG00000042292ENSMUST00000109579ENSMUST00000134469ENSMUST00000149582ENSMUSG00000042303ENSMUST00000042506ENSMUST00000124845ENSMUST00000139517ENSMUST00000154904ENSMUSG00000047938ENSMUST00000138675ENSMUST00000138715ENSMUSG00000050164ENSMUST00000166855ENSMUSG00000064587ENSMUST00000082653
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100359 ENST00000248929 N/A 11.037±0.00 1.947±0.00 6.658±0.00 8.532±3.70 7.597±2.51 4.885±1.98 10.964±8.07 N/A 7.570±3.53 N/A 26.473±0.00 17.482±2.86 29.591±0.00
ENST00000417424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457767 N/A N/A 5.797±0.00 N/A N/A N/A N/A 7.712±0.00 N/A N/A N/A N/A N/A N/A
ENST00000462457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000128285 ENST00000249016 0.027±0.00 N/A N/A 0.640±0.00 N/A N/A 0.039±0.00 N/A 0.330±0.00 0.060±0.00 N/A 0.524±0.47 0.046±0.02 0.106±0.00
ENST00000381433 0.047±0.00 0.310±0.00 N/A 0.920±0.00 N/A 0.246±0.00 N/A 0.364±0.00 N/A N/A N/A 3.042±0.00 0.156±0.02 N/A
ENST00000465662 N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A 0.423±0.00 N/A 0.357±0.12 0.136±0.00 N/A
ENST00000498400 N/A N/A N/A N/A N/A N/A N/A 0.131±0.00 N/A N/A N/A 0.557±0.00 0.091±0.00 N/A
ENSG00000172912 ENST00000312310 N/A 0.527±0.00 N/A N/A 0.080±0.00 N/A 0.279±0.00 N/A 0.442±0.00 N/A N/A N/A N/A N/A
ENSG00000196588 ENST00000355630 12.760±0.00 9.067±0.00 1.169±0.00 13.537±0.00 5.353±2.85 6.634±0.00 4.265±0.00 8.670±0.00 3.375±0.65 4.374±2.22 N/A 17.589±3.42 12.429±1.11 18.335±0.09
ENST00000396617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000407029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614754 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.932±0.00 N/A N/A N/A N/A
ENST00000618196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620651 N/A 10.016±0.00 N/A N/A 7.440±0.00 N/A N/A N/A N/A 7.575±0.00 N/A N/A N/A 17.426±0.00
ENSG00000227413 ENST00000442557 0.204±0.00 0.676±0.00 1.047±0.00 0.147±0.00 N/A N/A N/A N/A 0.094±0.00 N/A N/A 0.095±0.00 N/A 0.064±0.00
ENSG00000230071 ENST00000438116 0.061±0.00 0.252±0.00 0.228±0.00 0.011±0.00 0.472±0.30 0.611±0.42 0.123±0.02 0.265±0.02 0.117±0.10 0.933±0.76 0.072±0.00 0.339±0.21 0.197±0.14 0.324±0.03
ENSG00000231907 ENST00000442317 N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A 0.070±0.00 0.059±0.01 N/A 0.015±0.00
ENSG00000232564 ENST00000417123 0.212±0.00 0.655±0.00 0.277±0.00 0.387±0.00 N/A 0.267±0.00 0.306±0.12 0.298±0.01 0.275±0.25 0.227±0.00 0.129±0.00 0.085±0.03 0.038±0.02 0.377±0.32
ENST00000616875 0.214±0.00 N/A N/A 0.189±0.00 N/A N/A 0.140±0.00 0.290±0.12 0.345±0.00 0.259±0.00 N/A 0.054±0.00 0.106±0.00 0.880±0.00
ENSG00000272834 ENST00000609279 0.266±0.00 0.221±0.00 N/A 0.396±0.00 0.060±0.00 0.308±0.15 0.101±0.00 N/A N/A 0.338±0.00 N/A 0.313±0.22 0.563±0.00 0.774±0.46
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042292 ENSMUST00000109579 N/A N/A 3.631±0.00 10.570±0.00 4.646±2.68 N/A 0.949±0.00 1.492±0.30 N/A 4.290±0.00 1.533±0.00 3.124±1.01 4.854±2.10 N/A
ENSMUST00000123243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134469 N/A 8.088±1.01 N/A N/A N/A N/A N/A 1.370±0.00 0.887±0.00 N/A N/A 4.804±1.29 N/A N/A
ENSMUST00000135047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149582 4.657±1.07 4.816±3.04 5.641±0.97 11.433±4.63 6.804±2.97 14.194±4.59 1.289±0.12 3.072±0.98 1.511±0.64 7.572±0.72 2.994±1.79 7.653±2.31 4.610±2.30 9.652±3.17
ENSMUST00000154797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042303 ENSMUST00000042506 7.700±1.18 7.829±0.89 15.753±0.60 17.357±2.43 8.518±0.78 50.083±9.09 2.838±0.29 6.144±1.05 3.602±1.23 14.401±1.83 5.059±0.47 8.114±3.37 5.638±2.28 12.782±0.57
ENSMUST00000124845 N/A N/A N/A N/A N/A N/A N/A 2.463±0.00 1.402±0.06 N/A N/A 3.522±1.63 2.684±0.00 N/A
ENSMUST00000132039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139517 N/A N/A N/A N/A N/A 53.893±2.09 N/A N/A N/A 17.752±0.00 N/A N/A N/A 9.723±0.85
ENSMUST00000143147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154904 N/A N/A N/A 64.012±0.00 N/A N/A N/A N/A N/A N/A N/A 23.256±0.00 24.083±0.00 35.942±0.00
ENSMUST00000156064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047938 ENSMUST00000138675 N/A N/A N/A N/A 0.133±0.00 0.080±0.01 0.064±0.02 0.095±0.00 0.040±0.02 N/A N/A N/A 0.076±0.00 4.978±1.13
ENSMUST00000138715 0.091±0.00 N/A 0.022±0.00 0.043±0.03 0.136±0.05 0.151±0.00 N/A N/A 0.012±0.01 N/A 0.104±0.02 0.039±0.00 0.032±0.01 8.172±1.80
ENSMUSG00000050164 ENSMUST00000166855 0.207±0.14 0.378±0.19 4.050±0.07 1.900±1.15 0.298±0.12 1.082±0.21 0.038±0.00 0.954±0.17 1.399±2.10 0.710±0.19 1.668±0.64 0.780±0.47 0.306±0.28 0.221±0.16
ENSMUSG00000064587 ENSMUST00000082653 748.862±0.00 N/A N/A 1.964±0.00 N/A N/A N/A N/A N/A N/A 1.763±0.00 N/A N/A 4.424±0.00

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