C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 3534
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182522 Gm3534-001 ENSMUSG00000098192 10090 + 14:48408618-48409618 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182522 0.179±0.10 0.077±0.02 0.984±0.92 0.479±0.62 0.215±0.14 0.130±0.04 0.207±0.12 0.241±0.11 0.569±1.08 0.176±0.03 0.414±0.18 0.126±0.05 0.091±0.07 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000601 CIL_000601_0003 CGP 14:48120869-48515135
CIL_0007P7 CIL_0007P7_0002 UCNEbase 14:48393330-49089945
CIL_00083W CIL_00083W_0002 VISTA 14:48407510-49011185

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1181
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 917
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1162
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1181
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1181
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 510
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 966
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 902
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 974
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 867
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 647
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 854
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 813
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1061
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 893
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 649
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 861
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 595
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 713
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 819
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 678
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 645
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 645
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 2e-25 117
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 536
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 802
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1107
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 821
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 579
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 917
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 917
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 632
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 848
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 876
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 880
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 957
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 658
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 278
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 298
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 863
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 917
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 953
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 601
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 896
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 797
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 797
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 558
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1048

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