C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587663 ACTBP9-001 ENSG00000266920 9606 + 18:62442028-62443126 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000587663
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000587663 0.250±0.00 0.126±0.00 0.147±0.00 0.047±0.00 0.126±0.00 0.044±0.00 0.244±0.00 0.084±0.00 0.053±0.00 0.024±0.00 0.214±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076G CIL_00076G_0001 CGP 18:62325287-62587709

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1146
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1007
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1007
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1007
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 955
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 806
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 802
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 802
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 802
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 802
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 789
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 760
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 693
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 636
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 459
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 420
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 327
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 9.99967e-42 174

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