C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423391 ACTBL2-001 ENSG00000169067 9606 - 5:57480016-57482809 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverOvaryPlacentaENST00000423391
Transcript ID Breast Colon Liver Ovary Placenta
ENST00000423391 0.010±0.00 0.036±0.00 0.204±0.00 0.003±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0001 VISTA 5:57082966-57684027

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005524 IEA ATP binding
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054716 Actbl2-201 protein_coding Mus_musculus 0 1474
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 937
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 911
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 911
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 889
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 846
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 833
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 754
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 750
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 651
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 575
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 342
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 316
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 250

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