C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox protein 1, a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000006726 irx1a-001 ENSDARG00000009510 7955 + 16:820641-824798 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000006726
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000006726 3.622±3.43 25.183±17.39 2.697±0.00 0.111±0.00 1.651±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0004 UCNEbase 16:429462-1090747
CIL_0003O0 CIL_0003O0_0001 CGP 16:820641-1199727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007399 IDA nervous system development
GO:0007417 IMP central nervous system development
GO:0021953 IMP central nervous system neuron differentiation
GO:0031076 IMP embryonic camera-type eye development
GO:0035118 IMP embryonic pectoral fin morphogenesis
GO:0042462 IMP eye photoreceptor cell development
GO:0042472 IMP inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0060041 IMP retina development in camera-type eye
GO:0060042 IMP retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 231
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 213
ENSMUST00000093312 Irx3-002 protein_coding Mus_musculus 0 279
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 213
ENSMUST00000175795 Irx3-001 protein_coding Mus_musculus 0 279
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 231
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 209
ENST00000290552 IRX6-001 protein_coding Homo_sapiens 0 213
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 453
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 0 278
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 209
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 209
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 1e-35 154
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 209
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 0 270
ENST00000558315 IRX6-002 processed_transcript Homo_sapiens 0 202
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 209
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 209

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