C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SENP3-EIF4A1 readthrough (NMD candidate)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000614237 SENP3-EIF4A1-001 ENSG00000277957 9606 + 17:7563287-7578715 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037A CIL_00037A_0002 CGP 17:7561875-7578715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006508 IEA proteolysis
GO:0008234 IEA cysteine-type peptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066760 Senp3-002 protein_coding Mus_musculus 0 2012
ENSMUST00000005336 Senp3-001 protein_coding Mus_musculus 0 2012
ENSMUST00000163666 Eif4a1-001 protein_coding Mus_musculus 0 1875
ENSMUST00000122226 Eif4a-ps4-001 processed_pseudogene Mus_musculus 0 1749
ENSMUST00000117504 Gm6580-001 processed_pseudogene Mus_musculus 0 1663
ENSMUST00000072982 Gm5513-201 processed_pseudogene Mus_musculus 0 1626
ENSMUST00000120460 Gm12136-001 processed_pseudogene Mus_musculus 0 1264
ENSMUST00000102589 Eif4a1-013 nonsense_mediated_decay Mus_musculus 0 1144
ENSMUST00000118589 Gm15568-001 processed_pseudogene Mus_musculus 0 1133
ENSMUST00000128519 Eif4a1-012 retained_intron Mus_musculus 0 1118
ENSMUST00000121818 Gm12920-001 processed_pseudogene Mus_musculus 0 926
ENSDART00000011878 eif4a1b-001 protein_coding Danio_rerio 0 839
ENSMUST00000121086 Gm11258-001 processed_pseudogene Mus_musculus 0 819
ENSMUST00000153516 Senp3-005 retained_intron Mus_musculus 0 774
ENSMUST00000123995 Eif4a1-002 retained_intron Mus_musculus 0 763
ENSMUST00000134942 Senp3-003 protein_coding Mus_musculus 0 569
ENSMUST00000123084 Senp3-008 retained_intron Mus_musculus 0 569
ENSMUST00000139299 Eif4a1-006 processed_transcript Mus_musculus 0 499
ENSDART00000140602 eif4a1b-002 processed_transcript Danio_rerio 0 490
ENSMUST00000140310 Eif4a1-007 processed_transcript Mus_musculus 0 486
ENSMUST00000142214 Eif4a1-003 processed_transcript Mus_musculus 0 459
ENSMUST00000142348 Eif4a1-010 processed_transcript Mus_musculus 0 446
ENSMUST00000127677 Eif4a1-008 processed_transcript Mus_musculus 0 407
ENSDART00000122335 eif4a1a-201 protein_coding Danio_rerio 0 388
ENSDART00000121698 senp3b-001 protein_coding Danio_rerio 0 388
ENSMUST00000145289 Eif4a1-004 retained_intron Mus_musculus 0 307
ENSMUST00000140186 Eif4a1-011 processed_transcript Mus_musculus 0 294
ENSMUST00000135372 Senp3-007 processed_transcript Mus_musculus 0 268
ENSMUST00000129295 Eif4a1-005 retained_intron Mus_musculus 0 265
ENSMUST00000133067 Eif4a1-009 processed_transcript Mus_musculus 0 265
ENSMUST00000142206 Senp3-009 retained_intron Mus_musculus 0 209
ENSMUST00000130440 Senp3-006 retained_intron Mus_musculus 0 193

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