C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577269 EIF4A1-007 ENSG00000161960 9606 + 17:7572837-7578641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000577269
Transcript ID Colon
ENST00000577269 58.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037A CIL_00037A_0002 CGP 17:7561875-7578715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000339 TAS RNA cap binding
GO:0003676 IEA nucleic acid binding
GO:0003725 IDA double-stranded RNA binding
GO:0003729 TAS mRNA binding
GO:0003743 IEA translation initiation factor activity
GO:0004386 TAS helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005829 TAS cytosol
GO:0006200 IEA ATP catabolic process
GO:0006412 TAS translation
GO:0006413 TAS translational initiation
GO:0008026 IEA ATP-dependent helicase activity
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016281 TAS eukaryotic translation initiation factor 4F complex
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163666 Eif4a1-001 protein_coding Mus_musculus 0 1419
ENSMUST00000122226 Eif4a-ps4-001 processed_pseudogene Mus_musculus 0 1404
ENSMUST00000072982 Gm5513-201 processed_pseudogene Mus_musculus 0 1332
ENSMUST00000128519 Eif4a1-012 retained_intron Mus_musculus 0 1103
ENSMUST00000120460 Gm12136-001 processed_pseudogene Mus_musculus 0 1014
ENSMUST00000102589 Eif4a1-013 nonsense_mediated_decay Mus_musculus 0 981
ENSMUST00000121818 Gm12920-001 processed_pseudogene Mus_musculus 0 926
ENSMUST00000121086 Gm11258-001 processed_pseudogene Mus_musculus 0 819
ENSDART00000011878 eif4a1b-001 protein_coding Danio_rerio 0 676
ENSMUST00000139299 Eif4a1-006 processed_transcript Mus_musculus 0 499
ENSDART00000140602 eif4a1b-002 processed_transcript Danio_rerio 0 490
ENSMUST00000140310 Eif4a1-007 processed_transcript Mus_musculus 0 486
ENSMUST00000142214 Eif4a1-003 processed_transcript Mus_musculus 0 459
ENSMUST00000123995 Eif4a1-002 retained_intron Mus_musculus 0 409
ENSMUST00000127677 Eif4a1-008 processed_transcript Mus_musculus 0 407
ENSMUST00000142348 Eif4a1-010 processed_transcript Mus_musculus 0 342
ENSMUST00000145289 Eif4a1-004 retained_intron Mus_musculus 0 307
ENSMUST00000140186 Eif4a1-011 processed_transcript Mus_musculus 0 294
ENSMUST00000129295 Eif4a1-005 retained_intron Mus_musculus 0 265
ENSMUST00000133067 Eif4a1-009 processed_transcript Mus_musculus 0 265
ENSMUST00000118589 Gm15568-001 processed_pseudogene Mus_musculus 0 189

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